Jatropha Genome Database

JcCB0364041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0364041.10 + phase: 0 /partial
         (155 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034414001 assembled CDS                                       214   2e-56
GSVIVT01018935001 assembled CDS                                       127   3e-30

>GSVIVT01034414001 assembled CDS
          Length = 376

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 118/157 (75%), Gaps = 2/157 (1%)

Query: 1   VWASGFSAAFLKKNSVATR--VHMSSSDVEVFVGGKKFVEPKPAATEAALLVILEKFFEV 58
           VWASGFSAAFLK  SVAT+  +    S +E FV  K   EPKPA TEAALLV+LEKFF+V
Sbjct: 219 VWASGFSAAFLKTRSVATKGTIRYDESGMEEFVDRKAVAEPKPAITEAALLVVLEKFFQV 278

Query: 59  VLNFPXXXXXXXXXXXXXXXXQPTCPQLYIYSTADRVIPAKSVESFIQEQRRAGHEVRAC 118
           VLN P                QP CPQLYIYS+ADRVIPA SVE+FI+EQR+AG EVRAC
Sbjct: 279 VLNLPSVNRRLSDVLGQLSLGQPNCPQLYIYSSADRVIPAGSVETFIEEQRKAGREVRAC 338

Query: 119 NFVSSPHVDHFRNDPNLYSTQLSQFLDDYVLACCKHS 155
           NF+S+PHVDHFRNDP LY++QL+QFLDDYVL CCK S
Sbjct: 339 NFISTPHVDHFRNDPKLYTSQLTQFLDDYVLNCCKCS 375


>GSVIVT01018935001 assembled CDS
          Length = 470

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 87/153 (56%), Gaps = 11/153 (7%)

Query: 1   VWASGFSAAFLKKNSVA-------TRVHMSSSDVEVFVGGKKFVEPKPAATEAALLVILE 53
           VWA+GFSAA LKKNS +       T  + S S V+      K  E +P   E  LL +LE
Sbjct: 268 VWAAGFSAALLKKNSSSAYSLVEVTERNESKSKVD----SSKVQEKEPLIIETMLLSVLE 323

Query: 54  KFFEVVLNFPXXXXXXXXXXXXXXXXQPTCPQLYIYSTADRVIPAKSVESFIQEQRRAGH 113
            FF V+L  P                QP C QLY+YSTAD+VIP  SVE FI EQ R G 
Sbjct: 324 FFFSVILRLPDVNRRLTKIISILSKNQPPCSQLYLYSTADKVIPYHSVEMFINEQMRMGK 383

Query: 114 EVRACNFVSSPHVDHFRNDPNLYSTQLSQFLDD 146
           +VR+ NF  SPHVDH+R  PNLYS+++  FL +
Sbjct: 384 KVRSFNFGLSPHVDHYRTFPNLYSSEIHNFLKE 416