Jatropha Genome Database

JcCB0360521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360521.10 - phase: 0 /partial
         (380 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011020001 assembled CDS                                       593   e-170

>GSVIVT01011020001 assembled CDS
          Length = 1144

 Score =  593 bits (1529), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/369 (77%), Positives = 309/369 (83%)

Query: 1   MCTIQACGAKFHIKXXXXXXXXXXXXXXXXXXXARKGEVEDYQSTKRKEFKNFKENLVSF 60
           M   +ACGAK+H++                   AR+GE EDYQS+K+KEFKNFK+NLVSF
Sbjct: 116 MMLFEACGAKYHLREELLDETDVDDVVVALVNLARRGEAEDYQSSKKKEFKNFKDNLVSF 175

Query: 61  WDILVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASLMGLQLVKSFISVAKTLG 120
           WD LV+ECQNGPLFD+VLFDKC+DYIIALSCTPPRVYRQ+ASLMGLQLV SFI+VAK LG
Sbjct: 176 WDNLVIECQNGPLFDQVLFDKCVDYIIALSCTPPRVYRQVASLMGLQLVTSFITVAKMLG 235

Query: 121 AQRETTQRQLNAEKKKRTEGPRLESLNKRLSVTHEKIVVLEDMMRKIFTGLFVHRYRDID 180
           AQRETTQRQLNAEKKKRTEGPR+ESLNKRLS THEKI V+E+MMRKIFTGLFVHRYRDID
Sbjct: 236 AQRETTQRQLNAEKKKRTEGPRVESLNKRLSTTHEKITVIEEMMRKIFTGLFVHRYRDID 295

Query: 181 PNIRMSCIESLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDMDDNV 240
            +IRMSCI+SLGVWI+SYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYD+DDNV
Sbjct: 296 QDIRMSCIQSLGVWIISYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQNLYDVDDNV 355

Query: 241 PTLGLFTERFSNRMIELADDIDVSVAVSAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXAD 300
           P+LGLFTERFSNRMIELADDIDVSVAV AIGLVKQLLRHQ                   +
Sbjct: 356 PSLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLADDDLGPLYDLLIDDSTE 415

Query: 301 IRRAIGELVYDHLIAQKFNGSQSGTRGNDNGSSVVHLSRMLQILREFSTDPILSIYVIDD 360
           IR AIG LVYDHLIAQKFN SQS  +G+D  SS VHL RMLQILREFS DPILSIYVIDD
Sbjct: 416 IRHAIGALVYDHLIAQKFNSSQSHAKGDDGDSSEVHLGRMLQILREFSADPILSIYVIDD 475

Query: 361 VWEYMKAMK 369
           VWEYM AMK
Sbjct: 476 VWEYMNAMK 484