Jatropha Genome Database

JcCB0360101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0360101.10 + phase: 0 /partial
         (62 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036957001 assembled CDS                                       122   3e-29
GSVIVT01012856001 assembled CDS                                        87   1e-18

>GSVIVT01036957001 assembled CDS
          Length = 537

 Score =  122 bits (306), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/62 (87%), Positives = 58/62 (93%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQV 60
           IARNITTNELAN IRYGYL  PDGRFRNPYNHGCRKNCADF+I GYTDD+EIAWPPLQQV
Sbjct: 476 IARNITTNELANFIRYGYLHAPDGRFRNPYNHGCRKNCADFLIYGYTDDEEIAWPPLQQV 535

Query: 61  AS 62
           ++
Sbjct: 536 ST 537


>GSVIVT01012856001 assembled CDS
          Length = 635

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 1   IARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDE 51
           I+RNITTNE+ANA+RY YLRGP GRFRNPY+ G RKNC+DF+I GY +D+E
Sbjct: 498 ISRNITTNEMANAMRYSYLRGPGGRFRNPYDRGLRKNCSDFLINGYNEDEE 548