Jatropha Genome Database

JcCB0359851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0359851.10 + phase: 0 /partial
         (460 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001186001 assembled CDS                                       647   0.0  
GSVIVT01006443001 assembled CDS                                        71   9e-13
GSVIVT01025536001 assembled CDS                                        65   7e-11
GSVIVT01012219001 assembled CDS                                        62   7e-10

>GSVIVT01001186001 assembled CDS
          Length = 1361

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/468 (67%), Positives = 382/468 (81%), Gaps = 12/468 (2%)

Query: 1    MRVSSSQKPISEFVNSSLTNLHMSIVVLGMCNGFTPQSHSLSTTAGTILVQARDLAKLST 60
            +R  S  +P  +F++  LTNL+M   VL   +G      S S+  GTILVQARD AKL  
Sbjct: 612  IRGFSRDRPFFQFISPYLTNLNMGNAVLDSRSG---SIQSFSSMGGTILVQARDPAKLCE 668

Query: 61   EIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVEQAI 120
            E+ENAID H Y+DAW LFEQHM +EGFPRK+IVN VL SF+ES+D++WLEKAYGLVE+A 
Sbjct: 669  ELENAIDGHRYSDAWKLFEQHMGMEGFPRKSIVNTVLTSFSESLDVQWLEKAYGLVERAF 728

Query: 121  GESKQNLLEKEALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAP 180
             ESKQNLLEKE LIY+S+GLA CGL VPAST++RKL+EME++PPV+AWSAILAHMS TA 
Sbjct: 729  AESKQNLLEKETLIYISFGLASCGLPVPASTVLRKLVEMEEFPPVSAWSAILAHMSQTAS 788

Query: 181  GAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIALAGCLLFGTTKKAEQL 240
            GAYLA+ELILEIGYLFQDGRVDPRKKSN PL+AM+PNTT+ NIALAGCLLFGTT+KAE+L
Sbjct: 789  GAYLAAELILEIGYLFQDGRVDPRKKSNRPLLAMKPNTTAFNIALAGCLLFGTTRKAEKL 848

Query: 241  LDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQFRQFYNCLLTC 300
            LDMMPR+ +K +  LLI MA+IYERNGRRE+L+KL+RH+DEA  LSDIQFRQFYNCLLTC
Sbjct: 849  LDMMPRVGVKPDVNLLIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTC 908

Query: 301  HLKFGDLDSASSMVLKMLRKAKEVRNSLAIATLGIQS---------DRKSYSSLNHGEPD 351
            HLKFGDLDSAS MVL+MLRKA+E RNSL+ ATL  ++         ++ S  SL+H + D
Sbjct: 909  HLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSD 968

Query: 352  SLKQNKSIGNPMISYDEFLKDQKFLKLDAEAKELLNSLLSKLQAQVVLITTDRGVLQPTD 411
             L+  +   +  ISY+EF +D+ FLKL+AEAKE+L+ LL+KLQ QV  ITT+RG+LQPT+
Sbjct: 969  GLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQPTE 1028

Query: 412  KIYVKLVKAFLEAGKTKELASFLNQAEKEDSPASNDDSILVNVINSCI 459
            +IYVKLVKAFLEAGKTK+LA FL +AEKEDSP S D+S LV+VINSCI
Sbjct: 1029 RIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCI 1076


>GSVIVT01006443001 assembled CDS
          Length = 883

 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 27/211 (12%)

Query: 249 IKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQFRQFYNCLLTCHLKFGDLD 308
           +  +A  ++ +A I+E NG+R +LKK + H+D+        +R+FY+ LL+ H  F D+D
Sbjct: 7   VGADAHSIVIIAQIHEINGQRLDLKKFKCHIDQVSIQLLRHYRKFYDSLLSLHFTFNDID 66

Query: 309 SASSMVLKMLRKAKEVRNSLAIATLGIQSDRKSYSSLNHGEPDSLKQNKSIGNPMISYDE 368
            A+ +VL M R     R+SL+     I+ DR        G   S    + +   ++   E
Sbjct: 67  DAAGLVLDMCR----CRDSLS-----IRKDRNESYKTCLGPIGSYHLREGLKIQIVP--E 115

Query: 369 FLKDQKFLKLDAEAKELLNSLLSKLQAQVVLITTDRGVLQPTDKIYVKLVKAFLEAGKTK 428
            L+     K+D+             + ++VL +  + VL  ++K  VKLV A+   G+  
Sbjct: 116 LLQKDSVFKMDS-------------KQELVLFSNGKYVL--SNKALVKLVIAYQGDGRIG 160

Query: 429 ELASFLNQAEKEDSPASNDDSILVNVINSCI 459
           EL+  +   +KE         ++ +VI++CI
Sbjct: 161 ELSRLMLSLQKELGTLEG-GGLISDVIDACI 190


>GSVIVT01025536001 assembled CDS
          Length = 723

 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 131/282 (46%), Gaps = 25/282 (8%)

Query: 73  DAWNLFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVEQAIGESKQNLLEKEA 132
           +AW  + Q  Q+   P  T ++++++  +     + L +A  ++++   E + + L+  +
Sbjct: 103 EAWLTYVQCTQL---PSPTCLSRLVSQLSYQNTHQALTRAQSIIQRLRNERQLHRLDANS 159

Query: 133 LIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSLTAPGAYLASELILEI 192
           L  L+   AK G  + A+++I+ ++     P V AWSA+++ ++ +        +  LE 
Sbjct: 160 LGLLAVSAAKAGHTLYAASLIKSMLRSGYLPHVKAWSAVVSRLAAS------GDDGPLEA 213

Query: 193 GYLFQDGRVDPRKKSNAPLIA-MRPNTTSMNIALAGCLLFGTTKKAEQLLDMMPRIFIKV 251
             LF        + ++A L+A  RP+T + N  L  C   G TK+  Q+ + M ++  + 
Sbjct: 214 LKLFDSVTRRIHRFTDATLVADSRPDTAAYNAVLNACANLGDTKRFLQVFEEMTQLGAEP 273

Query: 252 NAALLITMANIYERNGRREELK-KLQRHVDEAQGLSDIQFRQFYNCLLTCHLKFGDLDSA 310
           +      M  +  R  R++ L   L+R +D+   L         + L+  ++ FGDL++A
Sbjct: 274 DVLTYNVMIKLCARVDRKDLLVFVLERILDKGIQLCMTTL----HSLVAAYVGFGDLETA 329

Query: 311 SSMVLKMLRKAKEVRNSLAIATLGIQSDRKSYSSLNHGEPDS 352
             +V  M    +E R  L      + S+  +Y+      PDS
Sbjct: 330 EKLVQAM----REGRQDLCKILRDVNSENPAYA------PDS 361


>GSVIVT01012219001 assembled CDS
          Length = 967

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 170/391 (43%), Gaps = 45/391 (11%)

Query: 58  LSTEIENAIDNHGYNDAWNLFEQHMQIEGFPRKTIVNKVLASFAESMDIRWLEKAYGLVE 117
           L + +  ++  +  ++AW  F+       FP K++ N ++A  A   D+  L++A+    
Sbjct: 64  LESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLKRAFASAV 123

Query: 118 QAIGESKQNLLEKEALIYLSYGLAKCGLVVPASTIIRKLIEMEQYPPVTAWSAILAHMSL 177
             + E   +LL+   +  L   +       PA  +I  + +   + P + W  ++  ++ 
Sbjct: 124 FLL-EKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMWGGVIVEITR 182

Query: 178 TAPGAYLASELILEIGYLFQDGRVDPRKKSNAPLIAMRPNTTSMNIALAGCLL-FGTTKK 236
                      +  +    +  R+   +K    L +M+P+  + N+AL GC     +  +
Sbjct: 183 R------NRSFVAFLRVFNETCRIAIDEK----LESMKPDLDACNVALEGCSQDLESVSE 232

Query: 237 AEQLLDMMPRIFIKVNAALLITMANIYERNGRREELKKLQRHVDEAQGLSDIQFRQFYNC 296
           AE++++MM  + I+ + +    +A +Y   G  E++ +L+  +   +G      +  Y+ 
Sbjct: 233 AEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLM---RGFGFSSKKVIYSY 289

Query: 297 LLTCHLKFGDLDSASSMVLKMLRKAKEVRNSLAIATLG------IQSDR-KSYSSL---- 345
           L+  ++K G+L+  S  + + LR+  E   + +  T        +Q+   K  +SL    
Sbjct: 290 LINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIET 349

Query: 346 NHGEPDSLKQNKSIGNPMISYDEFLKDQKFLKLDAEAKELLNSLLSKLQAQVVLITTDRG 405
              EP S+  ++SIG  +IS    L    FL       +  +S+L ++  Q V +     
Sbjct: 350 QKLEPSSIAVDRSIGYGIISACVSL---GFL-------DKAHSILDEMNVQGVSVGL--- 396

Query: 406 VLQPTDKIYVKLVKAFLEAGKTKELASFLNQ 436
                  +YV ++KAF +  +T E A  + +
Sbjct: 397 ------GVYVSILKAFCKEHRTAEAAQLVTE 421