Jatropha Genome Database

JcCB0357801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0357801.10 - phase: 0 
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027444001 assembled CDS                                       270   4e-73
GSVIVT01036051001 assembled CDS                                       103   5e-23
GSVIVT01012622001 assembled CDS                                        73   1e-13
GSVIVT01033949001 assembled CDS                                        66   2e-11
GSVIVT01016858001 assembled CDS                                        65   2e-11
GSVIVT01031450001 assembled CDS                                        51   5e-07

>GSVIVT01027444001 assembled CDS
          Length = 245

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 149/189 (78%)

Query: 61  DPRRTLCTIITVFLLLAGLTILIVWLIYRPYKPQFTVVGAAIYDLNTSSPPFISTSMQFT 120
           DPRR  CT I + LLLAG+T L+VWL+YRP +PQFTV+G AIYDLNT+SPP IST+MQFT
Sbjct: 57  DPRRACCTFIFILLLLAGITALVVWLVYRPQEPQFTVMGVAIYDLNTTSPPLISTNMQFT 116

Query: 121 LVTRNPNKRVSIIYDKLSAYVSYRDQAITPAIALPPLYHDTKSTVALSPVLGGSKVPVSA 180
           +VTRNPNKRVSI YD+LSA+VSYR+QAITP   LPPLYH   STVALSPVLGG  VPVS 
Sbjct: 117 IVTRNPNKRVSIYYDRLSAFVSYRNQAITPPAMLPPLYHRKHSTVALSPVLGGEAVPVSL 176

Query: 181 DVANGLVMDESYXXXXXXXXXXXXXXWKAGAIRTGRYGVYVKCDIWVGLKKGLIGQVPLL 240
           +VANGLVMDE+Y              WKAGA  +  YGVYVKCD+ VGLKKG++GQVP+L
Sbjct: 177 EVANGLVMDEAYGVMGLRLVLLGRLKWKAGAFWSMHYGVYVKCDVLVGLKKGVVGQVPML 236

Query: 241 GSPKCKVDV 249
           GSP C VD+
Sbjct: 237 GSPLCNVDI 245


>GSVIVT01036051001 assembled CDS
          Length = 208

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 63  RRTLCTIITVFLLLAGLTILIVWLIYRPYKPQFTVVGAAIYDLNTSSPP-FISTSMQFTL 121
           RR  C+++  F+ L    I ++++I RP KP F +    +  LNTSS P F++T++Q T+
Sbjct: 17  RRIFCSVLA-FIFLVLFVIFLIYVILRPSKPHFVLQDVTVLALNTSSAPGFLTTNVQVTV 75

Query: 122 VTRNPNKRVSIIYDKLSAYVSYRDQAITPAIALPPLYHDTKSTVALSPVLGGSKVPVSAD 181
            +RNPN R+ + Y+ L  + +YR Q IT    LP  Y   K  +  SP L G+ VP++  
Sbjct: 76  FSRNPNGRIGVYYENLDIFATYRSQQITLPALLPTTYQGHKDVIVWSPFLYGNSVPLAPY 135

Query: 182 VANGLVMDESYXXXXXXXXXXXXXXWKAGAIRTGRYGVYVKCDIWVGL--KKGLIGQVPL 239
           + + L  D                 WK G   +G Y ++V C  ++    +K  IG  P 
Sbjct: 136 LCDMLNQDLMTGMVLLNVKIDGRVKWKVGTWISGSYHIHVNCPAYISFCERKDCIGFGPT 195

Query: 240 LG---SPKCKVDV 249
           +       C VDV
Sbjct: 196 VKYQLVKSCTVDV 208


>GSVIVT01012622001 assembled CDS
          Length = 215

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 3/172 (1%)

Query: 64  RTLCTIITVFLLLAGLTILIVWLIYRPYKPQFTVVGAAIYDLNTSSPPFISTSMQFTLVT 123
           + +C+I    LL+ G    I+WL  RP++P+F +   ++ +L T    F  T + F +  
Sbjct: 35  KIICSIFLGLLLVVGFLTFILWLSLRPHRPRFHIHEFSVPNL-TEGAGF--TEITFNVTA 91

Query: 124 RNPNKRVSIIYDKLSAYVSYRDQAITPAIALPPLYHDTKSTVALSPVLGGSKVPVSADVA 183
           RN N+ V I YD + A + Y+DQ +     L P Y + K+T  +   L G+ +  +++  
Sbjct: 92  RNSNQNVGIYYDSMEASIYYKDQRVATTSLLFPFYQEPKNTTVIYKELNGNSITENSERT 151

Query: 184 NGLVMDESYXXXXXXXXXXXXXXWKAGAIRTGRYGVYVKCDIWVGLKKGLIG 235
             L+ D +               +K    +T  + ++  CD+ VG    ++G
Sbjct: 152 MELMNDVAKGTVVFGLELTSTIRFKVSTWKTKGHRMHANCDVRVGQDGNILG 203


>GSVIVT01033949001 assembled CDS
          Length = 198

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 29/139 (20%)

Query: 85  WLIYRPYKPQFTVVGAAIYDLNTSSPPFISTSMQFTLVTRNPNKRVSIIYDKLSAYVSYR 144
           W I +P  P+F +  A IY LN S+P  ++ ++Q TL                       
Sbjct: 58  WAILQPKDPRFVLQDATIYALNVSTPNILTVNIQITL----------------------- 94

Query: 145 DQAITPAIALPPLYHDTKSTVALSPVLGGSKVPVSADVANGLVMDESYXXXXXXXXXXXX 204
                 A  +PP Y   K  +  SP L G+ VPV+   A  L  D+SY            
Sbjct: 95  ------AYLIPPTYQGHKEIITWSPFLSGTAVPVAPYNAIALNQDQSYGALTLIIKIDGR 148

Query: 205 XXWKAGAIRTGRYGVYVKC 223
             WK G+  +GRY + VKC
Sbjct: 149 VKWKVGSFTSGRYHLNVKC 167


>GSVIVT01016858001 assembled CDS
          Length = 325

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 19/191 (9%)

Query: 69  IITVFLLLAGLTILIVWLIYRPYKPQFTVVGAAIYDLNTSSPPFISTSMQFTLVTRNPNK 128
           +I   L+LA +   I +++YRP++P F V    I   N ++   +++ +  ++  RNPNK
Sbjct: 135 VILSILVLAAIASAIFYVLYRPHRPSFAVTSLRISQFNVTATK-LTSKLDLSITARNPNK 193

Query: 129 RVSIIYD--KLSAYVSYRDQAITPAIALPPLYHDTKSTVALSPVLGGSKVPVSADVANGL 186
           ++  IYD   +SA  S  D ++     +P   H TK+T +   ++  +   + +     L
Sbjct: 194 KLVFIYDPTTVSAATSSSDVSVGTG-TIPAFVHGTKNTTSFKVLISSTSETLDSSSITAL 252

Query: 187 VMDESYXXXXXXXXXXXXXXWKAGAIRTGRYGVYVKCDIWVGLKKGLIGQVPLLGSP--- 243
             D                  K G ++T +  + V CD       G+   +P   SP   
Sbjct: 253 KSDLKSKSLPLKFQLDTKVKVKVGGLKTNKVKIRVTCD-------GIKATIPAGKSPGKA 305

Query: 244 -----KCKVDV 249
                KC+VD+
Sbjct: 306 STENVKCEVDI 316


>GSVIVT01031450001 assembled CDS
          Length = 265

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 2/139 (1%)

Query: 85  WLIYRPYKPQFTVVGAAIYDLNTSSPPFISTSMQFTLVTRNPNKRVSIIYDKLSAYVSYR 144
           WL+ +P    + +   +I+    S+   ++ +  F L   NPN++VSI YD +   VSY 
Sbjct: 108 WLVVKPKGLAYDIEDGSIHGFGLSNN-HLNATFHFVLRAYNPNRKVSIYYDSMEVSVSYD 166

Query: 145 DQAITPAIALPPLYHDTKSTVALSPVLGGSKVPVSADVANGLVMDESYXXXXXXXXXXXX 204
           DQ +  +  + P +   ++   L   L    + +S  V+  L +D S             
Sbjct: 167 DQTMA-SNGVQPFFQRHRNVTRLEVQLVAQSLLLSGPVSKDLHLDRSSGKVELEVRVKAR 225

Query: 205 XXWKAGAIRTGRYGVYVKC 223
             +K G  ++    + V C
Sbjct: 226 IRFKVGIWKSKHRTLRVFC 244