Jatropha Genome Database

JcCB0357671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0357671.10 + phase: 0 /pseudo/partial
         (244 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015331001 assembled CDS                                       367   e-102
GSVIVT01013770001 assembled CDS                                       287   3e-78
GSVIVT01027582001 assembled CDS                                       215   1e-56
GSVIVT01037628001 assembled CDS                                       206   6e-54
GSVIVT01013781001 assembled CDS                                       206   7e-54
GSVIVT01032542001 assembled CDS                                        72   3e-13
GSVIVT01018109001 assembled CDS                                        62   2e-10
GSVIVT01015193001 assembled CDS                                        57   8e-09
GSVIVT01008296001 assembled CDS                                        52   2e-07
GSVIVT01023268001 assembled CDS                                        47   9e-06

>GSVIVT01015331001 assembled CDS
          Length = 723

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 193/215 (89%)

Query: 1   PPDKKGVKPVQSPGPFLPGSGPRYVYTREEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRD 60
           PP KK VKPVQ+PGPFLPGSGPRYV +REEI GEPLT +E+K+L++GC+K+KRQLNMGRD
Sbjct: 209 PPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRD 268

Query: 61  GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRG 120
           GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV QQLEEKTGGKVI+ K G+++LFRG
Sbjct: 269 GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRG 328

Query: 121 RNYNYRTRPRFPLMLWKPVTPVYPRLIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGV 180
           RNYNYR RPRFPLMLWKPVTPVYPRL+QRAPEGLT+EEA  MRKKGR LIPI KLA+NGV
Sbjct: 329 RNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGV 388

Query: 181 FYNLAHEVRLAFQVCELVRINCQAIVRSDCRKIGA 215
           + +L + VR AF+ CELVRINCQ +  SD RKIGA
Sbjct: 389 YTDLVNNVREAFEECELVRINCQGLNASDYRKIGA 423


>GSVIVT01013770001 assembled CDS
          Length = 561

 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/215 (62%), Positives = 169/215 (78%)

Query: 1   PPDKKGVKPVQSPGPFLPGSGPRYVYTREEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRD 60
           PP  KGVK V+ PGPF  G  P    TREEI GEPL++ E++ L+K  L   RQ+N+GRD
Sbjct: 161 PPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRD 220

Query: 61  GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRG 120
           GLTHNML+ IH+HWKR+RVCK++CKGV T+DMDNVC  LEEKTGGK+IHR  G+VYLFRG
Sbjct: 221 GLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRG 280

Query: 121 RNYNYRTRPRFPLMLWKPVTPVYPRLIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGV 180
           RNYNYRTRP++P+MLWKP  PVYP+LIQ APEGLT  EA E+R KG++LIPI +L +NGV
Sbjct: 281 RNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGV 340

Query: 181 FYNLAHEVRLAFQVCELVRINCQAIVRSDCRKIGA 215
           + +L  +VR AF+   LV+I+C+ +  SD +KIGA
Sbjct: 341 YISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGA 375


>GSVIVT01027582001 assembled CDS
          Length = 418

 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 137/189 (72%), Gaps = 2/189 (1%)

Query: 28  REEIQGEPLTRDEVKDLIKGCLK--TKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCK 85
           RE+  GEPLT  E K L++ C +  TKRQ+N+GRDGLTHNML++IH HWK     +IKC 
Sbjct: 156 REKTLGEPLTAAERKILVEKCQRHRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCM 215

Query: 86  GVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPR 145
           GV TVDM NVC QLE+KT GKVIHR+ GL+ L+RGRNY+ + RP  PLMLW+P  P+YPR
Sbjct: 216 GVPTVDMKNVCTQLEDKTSGKVIHRQGGLLVLYRGRNYHPKKRPVIPLMLWRPHEPIYPR 275

Query: 146 LIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGVFYNLAHEVRLAFQVCELVRINCQAI 205
           LI+   +GL++EE  EMRK+G  +  + KLA+NG + +L   VR AF   EL+RI+CQ +
Sbjct: 276 LIKTVIDGLSIEETKEMRKRGLAVPALTKLAKNGYYGSLVPMVRDAFLTDELIRIDCQGL 335

Query: 206 VRSDCRKIG 214
            R D +KIG
Sbjct: 336 ERRDYKKIG 344


>GSVIVT01037628001 assembled CDS
          Length = 343

 Score =  206 bits (525), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 135/190 (71%), Gaps = 2/190 (1%)

Query: 28  REEIQGEPLTRDEVKDLIKGCLKT--KRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCK 85
           R+ + GEPL+ DE+ +L++    +   RQ+N+G+ G+THNMLD+IH HWKR    +IKC 
Sbjct: 121 RKAVLGEPLSEDEIAELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCL 180

Query: 86  GVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPR 145
           GV T+DM+NVC  LE+K GGK+I+R   ++ L+RGRNY+ + RP  PLMLWKP  P+YP+
Sbjct: 181 GVPTLDMENVCFHLEDKCGGKIIYRNINIILLYRGRNYDPKNRPVVPLMLWKPYAPIYPK 240

Query: 146 LIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGVFYNLAHEVRLAFQVCELVRINCQAI 205
           L++   +GLT EE  EMR +G +L P+ KL +NGV+ N+   VR AF+  E+VR++C  +
Sbjct: 241 LVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVREAFRSEEVVRLDCTHV 300

Query: 206 VRSDCRKIGA 215
             SDC++IG 
Sbjct: 301 GSSDCKRIGV 310


>GSVIVT01013781001 assembled CDS
          Length = 422

 Score =  206 bits (525), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/215 (49%), Positives = 136/215 (63%), Gaps = 36/215 (16%)

Query: 1   PPDKKGVKPVQSPGPFLPGSGPRYVYTREEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRD 60
           PP  KGVK V+ PGPF  G  P    TREEI GEPL++ E++ L+K  L   RQ+N+GRD
Sbjct: 28  PPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRD 87

Query: 61  GLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRG 120
           GLTHNML+ IH+HWKR+RVCK+ CKGV T+DMDNVC  LEEKTGGK+IHR  G+VYLFRG
Sbjct: 88  GLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRG 147

Query: 121 RNYNYRTRPRFPLMLWKPVTPVYPRLIQRAPEGLTVEEAAEMRKKGRDLIPIRKLARNGV 180
           RNYNY                                    +  +G +LIPI +L +NGV
Sbjct: 148 RNYNY------------------------------------LANEGENLIPICRLVKNGV 171

Query: 181 FYNLAHEVRLAFQVCELVRINCQAIVRSDCRKIGA 215
           + +L  +VR AF+   LV+I+C+ +  SD +KIGA
Sbjct: 172 YISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGA 206


>GSVIVT01032542001 assembled CDS
          Length = 1028

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 54/90 (60%)

Query: 36  LTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 95
           L  +E++ L    ++ +++L +G+ G+T  +++ IH  W+R  V KI+C+ +C ++M   
Sbjct: 186 LPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRT 245

Query: 96  CQQLEEKTGGKVIHRKAGLVYLFRGRNYNY 125
              LE KTGG VI R    + L+RG NY Y
Sbjct: 246 HDILERKTGGLVIWRSGSYIILYRGANYKY 275



 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 30  EIQGEPLTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCT 89
           EI  E +T +E   L K  L+ K  L +GR G+    ++N+H HWK R + KI   G   
Sbjct: 600 EIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSI 659

Query: 90  VDMDNVCQQLEEKTGGKVIH----RKAGLVYLFRGRNY 123
            D+  V + LE ++GG ++      K   + ++RG+NY
Sbjct: 660 EDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNY 697


>GSVIVT01018109001 assembled CDS
          Length = 902

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 54/103 (52%)

Query: 21  GPRYVYTREEIQGEPLTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVC 80
           G   + +R  +    L   E++ L    ++TK +  +G  G+T  ++D I   WK   + 
Sbjct: 205 GSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIV 264

Query: 81  KIKCKGVCTVDMDNVCQQLEEKTGGKVIHRKAGLVYLFRGRNY 123
           K+KC+G   ++M  + + LE KTGG VI R    V L+RG +Y
Sbjct: 265 KLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSY 307


>GSVIVT01015193001 assembled CDS
          Length = 881

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 40  EVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQL 99
           E++ L    L+   ++ +G  G+T +++D IH  W++  V K+K +G  + +M    + L
Sbjct: 268 ELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEIL 327

Query: 100 EEKTGGKVIHRKAGLVYLFRGRNY 123
           E +TGG VI R    V L+RG  Y
Sbjct: 328 ETRTGGLVIWRTGSSVVLYRGMAY 351


>GSVIVT01008296001 assembled CDS
          Length = 830

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 49/92 (53%)

Query: 39  DEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQ 98
           +E++ L +  +  + ++N+ + G+T  +L  IH  W++  + ++K       DM    + 
Sbjct: 217 EELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEI 276

Query: 99  LEEKTGGKVIHRKAGLVYLFRGRNYNYRTRPR 130
           +E +TGG V  R   ++ +FRG NY    +P+
Sbjct: 277 VERRTGGLVTWRSGSVMVVFRGTNYEGPPKPQ 308


>GSVIVT01023268001 assembled CDS
          Length = 331

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 34  EPLTRDEVKDLIKGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 93
           E LT +E    +K  LK K  + +GR G+   ++ N+H HWK+ +  ++  K     ++ 
Sbjct: 41  EILTPEEHFFFLKMGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVK 100

Query: 94  NVCQQLEEKTGGKV--IHRKAGLVYLFRGRNYN 124
            +  +L   TGG V  IH +  ++ ++RG+NY+
Sbjct: 101 EIAVELARLTGGIVLDIHEENTII-MYRGKNYS 132