Jatropha Genome Database

JcCB0356581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0356581.10 - phase: 1 /partial
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015513001 assembled CDS                                       228   6e-61
GSVIVT01001426001 assembled CDS                                        83   4e-17
GSVIVT01036594001 assembled CDS                                        80   2e-16

>GSVIVT01015513001 assembled CDS
          Length = 308

 Score =  228 bits (581), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 107/125 (85%), Positives = 115/125 (92%)

Query: 1   KLYFIDFEYGSYSYRGYDIANHFNEYAGYDCDYSLYPSKDEQYHFFRHYLQPDKPHEVSD 60
           KLYFIDFEYGSYSYRG+DI NHFNEYAGYDCDYSLYP+K+EQYHFFRHYL PDKP+EVSD
Sbjct: 179 KLYFIDFEYGSYSYRGFDIGNHFNEYAGYDCDYSLYPTKNEQYHFFRHYLAPDKPNEVSD 238

Query: 61  RDLEALYIEANTFMLASHFFWALWALIQAKMSPIDFDYLGYFFLRYNEYKKQKEMSSSLA 120
           +DLE LY+EANTFMLASH +WALWALIQAKMSPIDFDYLGY+FLRY EY KQKE   SLA
Sbjct: 239 KDLETLYVEANTFMLASHLYWALWALIQAKMSPIDFDYLGYYFLRYEEYTKQKEKCLSLA 298

Query: 121 LSYLS 125
            SYLS
Sbjct: 299 RSYLS 303


>GSVIVT01001426001 assembled CDS
          Length = 358

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 10/130 (7%)

Query: 2   LYFIDFEYGSYSYRGYDIANHFNEYAG-------YDCDYSLYPSKDEQYHFFRHYLQPDK 54
           +  ID+EY SY+   YD+ANHF E          +  DYS YP ++E++ F R YL    
Sbjct: 218 ITIIDYEYASYNPVAYDLANHFCEMVANYHTDTPHILDYSKYPDQEERHRFIRTYLS-SA 276

Query: 55  PHEVSDRDLEALYIEANTFMLASHFFWALWALIQAKMSPIDFDYLGYFFLRYNEY--KKQ 112
            ++ SD ++E L  +A  + LA+H FW +W +I   ++ I+F+Y+ Y   R+ +Y  +K 
Sbjct: 277 GNQPSDSEVEKLACDAEKYTLANHLFWGIWGIISGHVNTIEFNYMEYARQRFQQYWLRKP 336

Query: 113 KEMSSSLALS 122
             + SS A S
Sbjct: 337 LLLGSSKARS 346


>GSVIVT01036594001 assembled CDS
          Length = 463

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 14/128 (10%)

Query: 2   LYFIDFEYGSYSYRGYDIANHFNEYAG-------YDCDYSLYPSKDEQYHFFRHYL--QP 52
           +  ID+EY SY+   YDIANHF E A        +  DYS YPS +++  F R YL    
Sbjct: 321 ITIIDYEYASYNPVTYDIANHFCEMAADYHTETPHILDYSKYPSLEKRQRFLRIYLGHAG 380

Query: 53  DKPHEVSDRDLEALYIEANTFMLASHFFWALWALIQAKMSPIDFDYLGYFFLRYNEY--K 110
           D+P+   D +LE L  +   + LASH  W LW +I   ++ IDF+Y+ Y   R+ +Y  +
Sbjct: 381 DQPN---DLELEVLVQDVEKYTLASHLLWGLWGIISEHVNEIDFNYMEYARQRFEQYWLR 437

Query: 111 KQKEMSSS 118
           K + + SS
Sbjct: 438 KPELLGSS 445