Jatropha Genome Database

JcCB0356071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0356071.10 + phase: 0 /partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027627001 assembled CDS                                       245   7e-66

>GSVIVT01027627001 assembled CDS
          Length = 365

 Score =  245 bits (625), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 125/158 (79%)

Query: 1   MAALSGYGVFLKESALQLPRSVSTNYYKRRNAKWSPPQAAIIPNFHLPMRSFEVKNRTSS 60
           MA L  YG  LK+S LQ PR    +  KRRNAKW   QAA+IPNFHLPMRSFEVKNRTS 
Sbjct: 1   MAMLKNYGACLKDSTLQFPRPNCGDINKRRNAKWKSAQAAVIPNFHLPMRSFEVKNRTSV 60

Query: 61  EEIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIVDXXXXXXXXXXXXXXQLMSWDEHI 120
           ++IKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIVD              QLMSWDEHI
Sbjct: 61  DDIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIVDGAEGVIVGGTTGEGQLMSWDEHI 120

Query: 121 MLIGHTVNCFGSSIKVIGNTGSNSTREAIHATVQGFAV 158
           MLIGHTVNCFG SIKVIGNTGSNSTREAIHAT QGFAV
Sbjct: 121 MLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAV 158