Jatropha Genome Database

JcCB0354791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0354791.10 - phase: 1 /partial
         (102 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036773001 assembled CDS                                       181   5e-47
GSVIVT01036775001 assembled CDS                                       167   8e-43

>GSVIVT01036773001 assembled CDS
          Length = 405

 Score =  181 bits (460), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 97/102 (95%)

Query: 1   VKTFSEALETTKTVIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAV 60
           +K F+EALETTKTVIWNGPMGVFEFDKFA GT A+AKKLAELSGK VTTIIGGGDSVAAV
Sbjct: 304 IKIFNEALETTKTVIWNGPMGVFEFDKFAEGTVAVAKKLAELSGKDVTTIIGGGDSVAAV 363

Query: 61  EKVGVADVMSHISTGGGASLELLEGKELPGVLALDEATPVAV 102
           EKVGVADVMSHISTGGGASLELLEGKELPGV+ALDEATPV V
Sbjct: 364 EKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPVPV 405


>GSVIVT01036775001 assembled CDS
          Length = 349

 Score =  167 bits (424), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 93/97 (95%)

Query: 1   VKTFSEALETTKTVIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAV 60
           +KTF E+L+TTKT+IWNGPMGVFEFDKFA+GTEAIAKKLA+LS KGVTTIIGGGDSVAAV
Sbjct: 253 IKTFGESLDTTKTIIWNGPMGVFEFDKFALGTEAIAKKLADLSEKGVTTIIGGGDSVAAV 312

Query: 61  EKVGVADVMSHISTGGGASLELLEGKELPGVLALDEA 97
           EKVG+A+ MSHISTGGGASLELLEGK LPGVLALD+A
Sbjct: 313 EKVGLAEKMSHISTGGGASLELLEGKTLPGVLALDDA 349