Jatropha Genome Database

JcCB0354521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0354521.10 - phase: 0 
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023862001 assembled CDS                                       228   6e-61

>GSVIVT01023862001 assembled CDS
          Length = 367

 Score =  228 bits (582), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/119 (89%), Positives = 112/119 (94%)

Query: 1   MESSSELVPFPLLMTPIESNYRACTIPYRFPSDNPRKATPTELQWIDLFYSSIPSFKKRA 60
           MESSSELV FPLL+TPIESNYRACTIPYRFPSDNPRKATPTEL WIDLF +SIPSF+KRA
Sbjct: 1   MESSSELVAFPLLLTPIESNYRACTIPYRFPSDNPRKATPTELSWIDLFLNSIPSFRKRA 60

Query: 61  ENDTTVTDAPAKAEKFAQRYSEILEDLKKDPESHGGPPDCILLCRLREQILRELGFRDI 119
           E+D TV DA  KAEKFAQRYSEILEDLKKDPESHGGPPDC+LLCRLREQ+LRELGFRDI
Sbjct: 61  ESDGTVADANVKAEKFAQRYSEILEDLKKDPESHGGPPDCVLLCRLREQVLRELGFRDI 119