Jatropha Genome Database

JcCB0354231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0354231.10 + phase: 0 /partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004516001 assembled CDS                                       207   1e-54
GSVIVT01037449001 assembled CDS                                       122   7e-29
GSVIVT01005188001 assembled CDS                                        80   3e-16
GSVIVT01006889001 assembled CDS                                        80   4e-16
GSVIVT01023992001 assembled CDS                                        71   1e-13
GSVIVT01010901001 assembled CDS                                        67   2e-12
GSVIVT01017101001 assembled CDS                                        58   2e-09
GSVIVT01035712001 assembled CDS                                        57   3e-09
GSVIVT01008684001 assembled CDS                                        55   1e-08
GSVIVT01023932001 assembled CDS                                        51   2e-07

>GSVIVT01004516001 assembled CDS
          Length = 628

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/172 (63%), Positives = 122/172 (70%), Gaps = 27/172 (15%)

Query: 1   LLQSGSKKEKAVTMKDLSAEREDPSEFITHRAKDFLSSIKDIEHRFFRASESGKEVSRML 60
           L QSGSK+E+A+  KD+SAEREDPSEFITHRAKDFLSSIKDIEHRFFRASESGKEVSRML
Sbjct: 183 LDQSGSKRERALVEKDVSAEREDPSEFITHRAKDFLSSIKDIEHRFFRASESGKEVSRML 242

Query: 61  EANNIRVGYSETK--------------------------EPAEHVTKVITWKRTAXXXXX 94
           E N I +GY + K                          EP +H TK+ITW R+      
Sbjct: 243 ETNKIGMGYCDAKGRSSASRLFGAFQLVCCQEKSALVSHEPLQHGTKIITWNRSTSSRSS 302

Query: 95  XXXNPLATAA-RDDVSDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEVK 145
              NPL TAA ++D  DSGSDFVEEFCMIAGSHSSTL+RLYAWERKLYDEVK
Sbjct: 303 SSKNPLTTAATKEDNDDSGSDFVEEFCMIAGSHSSTLERLYAWERKLYDEVK 354


>GSVIVT01037449001 assembled CDS
          Length = 650

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 80/139 (57%), Gaps = 26/139 (18%)

Query: 33  KDFLSSIKDIEHRFFRASESGKEVSRMLEANNIR-----------------------VGY 69
           KDF SSI+DIE+ F +ASESGKEV RMLEAN                           G 
Sbjct: 230 KDFFSSIRDIEYLFVKASESGKEVPRMLEANKFHFRPIFPQKDSGSVTSTLFKACFSCGE 289

Query: 70  SET---KEPAEHVTKVITWKRTAXXXXXXXXNPLATAARDDVSDSGSDFVEEFCMIAGSH 126
             T   +EPA+   K +TW RTA        NPL + ++DD+ D  S+  + FCM +GSH
Sbjct: 290 DPTIVQEEPAQAAMKYLTWHRTASSRSSSSRNPLGSNSKDDIEDLTSNLFDNFCMTSGSH 349

Query: 127 SSTLDRLYAWERKLYDEVK 145
           +STLDRL+AWERKLYDEVK
Sbjct: 350 ASTLDRLFAWERKLYDEVK 368


>GSVIVT01005188001 assembled CDS
          Length = 640

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 5/119 (4%)

Query: 32  AKDFLSSIKDIEHRFFRASESGKEVSRMLEANNIRVGYS--ETKEPAEHVTKVITWKRTA 89
            ++ L ++KD+E  F RA ESG +VSR+LE N + +  S  E KE  + + + ITW R+ 
Sbjct: 188 GRELLEALKDVEDHFVRAYESGFDVSRLLEVNRVHLLSSLEEIKESPKKLVRSITWNRSN 247

Query: 90  XXXXXXXXNPLATAARDDV--SDSGSDFVEEF-CMIAGSHSSTLDRLYAWERKLYDEVK 145
                     LA  ++     S+ G+D ++++  M +GS S TL+RLYAWE+KLY+EVK
Sbjct: 248 LSRSSSSKTFLAPGSKSSSTWSELGNDLIDDYEGMASGSLSQTLERLYAWEKKLYEEVK 306


>GSVIVT01006889001 assembled CDS
          Length = 596

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 5/119 (4%)

Query: 32  AKDFLSSIKDIEHRFFRASESGKEVSRMLEANNIRVGYS--ETKEPAEHVTKVITWKRTA 89
            ++ L ++KD+E  F RA ESG +VSR+LE N + +  S  E KE  + + + ITW R+ 
Sbjct: 163 GRELLEALKDVEDHFVRAYESGFDVSRLLEVNRVHLLSSLEEIKESPKKLVRSITWNRSN 222

Query: 90  XXXXXXXXNPLATAARDDV--SDSGSDFVEEF-CMIAGSHSSTLDRLYAWERKLYDEVK 145
                     LA  ++     S+ G+D ++++  M +GS S TL+RLYAWE+KLY+EVK
Sbjct: 223 LSRSSSSKTFLAPGSKSSSTWSELGNDLIDDYEGMASGSLSQTLERLYAWEKKLYEEVK 281


>GSVIVT01023992001 assembled CDS
          Length = 619

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 18/123 (14%)

Query: 31  RAKDFLSSIKDIEHRFFRASESGKEVSRMLEANNIRVGYSETKEPAEHVTKVITWKRT-- 88
           R ++ L ++KDIE  F RA +SGK+VSRMLEA+ + +    + +    + + ITW R+  
Sbjct: 151 RGRELLDALKDIEDHFIRAYDSGKDVSRMLEASRVHMLSGNSTK----LIQAITWHRSSS 206

Query: 89  ------AXXXXXXXXNPLATAARDDVSDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYD 142
                 +        +   T  ++D+ D          M +GSHS TL RLYAWE+KLYD
Sbjct: 207 RSSSCKSLVASSSKSSSTWTEYKNDLFDDCGG------MNSGSHSLTLGRLYAWEKKLYD 260

Query: 143 EVK 145
           EVK
Sbjct: 261 EVK 263


>GSVIVT01010901001 assembled CDS
          Length = 715

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 13  TMKDLSAEREDP--SEFITHRAKDFLSSIKDIEHRFFRASESGKEVSRMLEANNIRVGYS 70
           T+ D  ++ E P  + ++  R       IKD+E +F     S  EVS +LEA   R  Y+
Sbjct: 267 TVSDQKSKEETPGFTVYVNRRPTSMAEVIKDLEEQFMIVCNSANEVSALLEAT--RAQYA 324

Query: 71  ETKEPAEHV-----TKVITWKRTAXXXXXXXXNPLATAARDDVSDSGSDFVEEFCMIAGS 125
            T      +       +I    +         N  ++++RD+  +S SD  EE CM +GS
Sbjct: 325 STSNELSGMKMLNPVALIRSASSRSSSSRFLMN--SSSSRDEGYESSSDVSEESCMFSGS 382

Query: 126 HSSTLDRLYAWERKLYDEVK 145
           H STLDRLYAWE+KLYDEVK
Sbjct: 383 HQSTLDRLYAWEKKLYDEVK 402


>GSVIVT01017101001 assembled CDS
          Length = 529

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 21/119 (17%)

Query: 32  AKDFLSSIKDIEHRFFRASESGKEVSRMLEANNIRV--GYSETKEPAEH---VTKVITWK 86
            K+ L    +++  F +ASES  EVS+MLEA  +     +++ +   +H   V + ITW 
Sbjct: 125 GKNLLQIFIELDDHFLKASESAHEVSKMLEATRLHYHSNFADNRGHIDHSARVMRAITWN 184

Query: 87  RTAXXXXXXXXNPLATAARDDVSDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEVK 145
           R+          P A   +DD      +          +H++ LD++ AWE+KLYDEVK
Sbjct: 185 RSFKGL------PNADDGKDDFDSEEHE----------THATVLDKMLAWEKKLYDEVK 227


>GSVIVT01035712001 assembled CDS
          Length = 440

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 21/117 (17%)

Query: 34  DFLSSIKDIEHRFFRASESGKEVSRMLEANNIRV--GYSETKEPAEH---VTKVITWKRT 88
           + +  +  I+  F +ASES +EV++MLEAN +     +++     +H   V +VITW ++
Sbjct: 52  NLMQILNVIDDHFLKASESAQEVTKMLEANRMHYHSNFADNGGHIDHSARVMRVITWNKS 111

Query: 89  AXXXXXXXXNPLATAARDDVSDSGSDFVEEFCMIAGSHSSTLDRLYAWERKLYDEVK 145
                           + DV D+     EE+     +H++ LD+L AWE+KLYDEVK
Sbjct: 112 IRGMHNADD-------KKDVFDA-----EEY----ETHATVLDKLLAWEKKLYDEVK 152


>GSVIVT01008684001 assembled CDS
          Length = 718

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 14/111 (12%)

Query: 38  SIKDIEHRFFRASESGKEVSRMLEANNIRVGYSETKEPAEHVTKVITWKRTAXXXXXXXX 97
           ++++I+  F RASESG  VS+MLEA  +         P   V +V     ++        
Sbjct: 264 AMREIQVLFERASESGGGVSKMLEAGKLNY------HPKSGVYQV-----SSKMLHVITP 312

Query: 98  NPLATAARDDVSDSGS---DFVEEFCMIAGSHSSTLDRLYAWERKLYDEVK 145
           + L  +++    + GS   D  E+  M +G+ SSTL +L+ WE+KLYDEVK
Sbjct: 313 SLLVVSSQPSTENIGSIYLDLNEDMGMSSGNLSSTLKKLHMWEKKLYDEVK 363


>GSVIVT01023932001 assembled CDS
          Length = 742

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 14/114 (12%)

Query: 39  IKDIEHRFFRASESGKEVSRMLEANNIRVGYSETKEPAEHVTKVITWKRTAXXXXXXXXN 98
           +++I+ +F RASE G E+++MLE     VG      P   V+  +    +          
Sbjct: 319 VREIQVQFVRASECGNELAKMLE-----VG-KHPYHPKNQVSSKMLHAISPSVAALVSSQ 372

Query: 99  PLATAARDDVSDSG--SDFVE-EF----CMIAGSHSSTLDRLYAWERKLYDEVK 145
           P AT+   + S SG  +D +E EF     M +G+ SSTL +L+ WE+KLYDEVK
Sbjct: 373 P-ATSKNAESSASGEKADPMELEFDGGAGMRSGNLSSTLQKLHLWEKKLYDEVK 425