Jatropha Genome Database

JcCB0351641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0351641.10 + phase: 0 /partial
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016561001 assembled CDS                                       175   5e-45

>GSVIVT01016561001 assembled CDS
          Length = 407

 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 101/125 (80%), Gaps = 5/125 (4%)

Query: 6   MAMLQHVCSVPLARAVRQPHSFTIVSSRKLRTTSSAVSPPRTSHVDPRVLLGMSEPELQQ 65
           MA+LQH+CS PL RA+R   S  + S    RT S+ +SP R +HVD  VLLGMSE ELQQ
Sbjct: 1   MALLQHLCSAPLTRAIRS-RSLALSS----RTMSTTLSPTRVAHVDSHVLLGMSEQELQQ 55

Query: 66  LANDFGQQSYRGKQLHHLIYERKVKEIQDFSQLPQAFRHELEEAGWKIGRSPIYRTVTAA 125
           L+ D GQQSYRGKQLHHLIY+RKVKEIQ FSQLPQAFR++L+E GW++GRS IY++VTAA
Sbjct: 56  LSLDLGQQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGGWRVGRSSIYQSVTAA 115

Query: 126 DGTVK 130
           DGTVK
Sbjct: 116 DGTVK 120