Jatropha Genome Database

JcCB0347911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0347911.10 + phase: 0 /partial
         (316 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018803001 assembled CDS                                       342   1e-94

>GSVIVT01018803001 assembled CDS
          Length = 291

 Score =  342 bits (878), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/206 (83%), Positives = 180/206 (87%), Gaps = 6/206 (2%)

Query: 2   ATKDTAGSGSATVNGDASAATPPQKHKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRS 61
           + K+TAGSGSA       A  PP K KIALITGITGQDGSYLTEFLLNKGYEVHGLIRRS
Sbjct: 3   SEKETAGSGSAAAINGGEALEPP-KRKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRS 61

Query: 62  SNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVS 121
           SNFNTQR+NHIYIDPHN+HKARMKLHYADL+DASSLRRW+DTI PDEVYNLAAQSHVAVS
Sbjct: 62  SNFNTQRLNHIYIDPHNSHKARMKLHYADLSDASSLRRWIDTIAPDEVYNLAAQSHVAVS 121

Query: 122 FEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHP 181
           FEIPDYTADVVATGALRLLEAVRSHI ATGRSHIRYYQAGSSEMFGST PPQSET+PFHP
Sbjct: 122 FEIPDYTADVVATGALRLLEAVRSHIMATGRSHIRYYQAGSSEMFGSTSPPQSETSPFHP 181

Query: 182 RSPYAASKCAAHWYTVNYREAYGLFA 207
           RSPYAASK     Y V  +  +G FA
Sbjct: 182 RSPYAASK-----YWVAEQTVHGEFA 202