Jatropha Genome Database

JcCB0343111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0343111.10 - phase: 0 /partial
         (302 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009889001 assembled CDS                                       326   8e-90
GSVIVT01033929001 assembled CDS                                       219   1e-57
GSVIVT01024117001 assembled CDS                                       214   3e-56
GSVIVT01031926001 assembled CDS                                        74   7e-14
GSVIVT01019007001 assembled CDS                                        65   5e-11
GSVIVT01008576001 assembled CDS                                        56   2e-08
GSVIVT01000808001 assembled CDS                                        51   8e-07
GSVIVT01008026001 assembled CDS                                        49   2e-06
GSVIVT01020012001 assembled CDS                                        48   6e-06

>GSVIVT01009889001 assembled CDS
          Length = 288

 Score =  326 bits (836), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 178/290 (61%), Positives = 202/290 (69%), Gaps = 23/290 (7%)

Query: 15  MIFGYAYPAYECYKTVEKNKPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAK 74
           M+FGYAYPAYEC+KTVEKNKPEIE LRFWCQYWILVA +TVCERIGD FISWVPMYSEAK
Sbjct: 12  MVFGYAYPAYECFKTVEKNKPEIEQLRFWCQYWILVAAITVCERIGDTFISWVPMYSEAK 71

Query: 75  LAFIIYLWYPKTKGTTYVYDSFFKPYVAKHENEIDRSLLELRTRAGDMFILYWQRAASYG 134
           LAF IYLWYPKTKGTTYVYDSFFKPYVAKHE EIDR+LLELRTRAGD+ +LYWQ+AASYG
Sbjct: 72  LAFFIYLWYPKTKGTTYVYDSFFKPYVAKHETEIDRNLLELRTRAGDVAVLYWQKAASYG 131

Query: 135 QTRVFDILQYVASQSTTPRPRAAQPQQGTRTRQPANAPTRQPSTTSNCQPAVQQXXXXXX 194
           QTR+FDILQYVASQS TPRPR AQ QQG R RQ   A  R+ +T      A Q       
Sbjct: 132 QTRIFDILQYVASQS-TPRPRPAQ-QQGPRARQKPAAANRRSAT------ATQPPQTEEP 183

Query: 195 XXXXXXXXXXRHQAEVNEEVIXXXXXXXXXXXXXXXXXXXXTAPS-NAQKTN----ASET 249
                     ++Q E  +E                       AP+ NAQKT     A+ET
Sbjct: 184 PSPTSSTTSSQNQEEATQE---------EPPPSQEPKEAAPPAPTLNAQKTTVTQPATET 234

Query: 250 SSQPSSSKAEAMEIEAEPS-KNENANPPPKDTNMDEAIRRTSARLRKSRS 298
           +SQ +S+ AE M+IE   S  NENANP P +T M+E IR T ++ RK+RS
Sbjct: 235 TSQSTSNGAEDMQIEPVSSLPNENANPQPPETVMEETIRVTRSKFRKTRS 284


>GSVIVT01033929001 assembled CDS
          Length = 236

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 125/179 (69%), Gaps = 7/179 (3%)

Query: 15  MIFGYAYPAYECYKTVEKNKPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAK 74
           M+ GYAYPA+ECYK VEKNK EIE LRFWCQYWI+VA+LTV ER  D FISW+PMY E K
Sbjct: 12  MLLGYAYPAFECYKIVEKNKVEIEELRFWCQYWIIVAMLTVTERFADIFISWLPMYGEMK 71

Query: 75  LAFIIYLWYPKTKGTTYVYDSFFKPYVAKHENEIDRSLLELRTRAGDMFILYWQRAASYG 134
           LAFIIYLWYPKTKGT YVY+   +PYVAKHE +IDR LLELR R  D+ I YWQ  A +G
Sbjct: 72  LAFIIYLWYPKTKGTGYVYEVLLRPYVAKHETDIDRKLLELRARVWDLAIFYWQHCAKFG 131

Query: 135 QTRVFDILQYVASQSTTPRPRAA---QPQQGTRTRQPANAPTR-QPSTTSN---CQPAV 186
           QT    +LQ++A+QS           + ++G  TRQ +    +  PSTT N    QP++
Sbjct: 132 QTTFVQMLQFLAAQSARMPSHGGSEKEVEEGKSTRQDSKKSAQATPSTTINHDISQPSI 190


>GSVIVT01024117001 assembled CDS
          Length = 272

 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 114/133 (85%)

Query: 14  RMIFGYAYPAYECYKTVEKNKPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEA 73
           ++ FGYAYPAYEC+KTV+KNKPEIE L  WCQYW+L+A+LT+CER+ DAFISW+P+Y EA
Sbjct: 56  KLTFGYAYPAYECFKTVDKNKPEIEQLVLWCQYWVLIALLTICERVSDAFISWLPLYGEA 115

Query: 74  KLAFIIYLWYPKTKGTTYVYDSFFKPYVAKHENEIDRSLLELRTRAGDMFILYWQRAASY 133
           KLA  IYL YPKTKGTTY+Y+SF +PY+AKHE EIDR+LLELR +A ++ ++YWQ+A  +
Sbjct: 116 KLALFIYLRYPKTKGTTYIYNSFLRPYLAKHETEIDRNLLELRVKAREIAVVYWQKAVCH 175

Query: 134 GQTRVFDILQYVA 146
           GQT  F ILQYV+
Sbjct: 176 GQTMFFKILQYVS 188


>GSVIVT01031926001 assembled CDS
          Length = 214

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 18  GYAYPAYECYKTVEKNKPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAF 77
           G  +P Y  +K +EK K + E  R W  YW      ++ E   D  + W P+Y   K AF
Sbjct: 35  GIVFPVYSTFKAIEK-KDQNEQQR-WLVYWAAYGSFSLAEAFADKVLYWFPLYYHMKFAF 92

Query: 78  IIYLWYPKTKGTTYVYDSFFKPYVAKHENEIDRSLLELRTRAGDM--FILYWQRAASYGQ 135
           +++L  P T G  ++Y    +P++ +H+ ++D+ +  L    G+M  FI   Q      +
Sbjct: 93  LVWLQLPSTDGAGHLYMRHLRPFLLRHQAKLDQIMGLLY---GEMAKFISLHQAEIQLAR 149

Query: 136 TRVFDILQYVASQSTTPRPRAAQPQQGTRTRQPANAPTRQPSTTS 180
           T V  +L  V     +   +     +G  TR+  ++ T QP+  S
Sbjct: 150 TFVMKVLAGVRDIIHSDVKQVTGAIEGPTTRRTHDSTTTQPTHDS 194


>GSVIVT01019007001 assembled CDS
          Length = 142

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 18  GYAYPAYECYKTVEKNKPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAF 77
           G   P Y  +K +E+ K + E  R W  YW      ++ E   D  ISW P+Y   K AF
Sbjct: 36  GIVLPVYSTFKAIER-KDQNEEQR-WLLYWAAYGSFSLVEVFADKLISWSPLYYHLKFAF 93

Query: 78  IIYLWYPKTKGTTYVYDSFFKPYVAKHENEIDR 110
           +++L +P + G  ++Y  + +P+  +H+  ID+
Sbjct: 94  LVWLQFPSSGGARHLYMCYLRPFFLRHQARIDQ 126


>GSVIVT01008576001 assembled CDS
          Length = 141

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 21  YPAYECYKTVEKN-KPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFII 79
           YP Y     +E   K + E    W  YWIL + LT+ E +    + W+P++ + KL F+ 
Sbjct: 23  YPLYASVMAIESTTKVDDEQ---WLAYWILYSFLTLMEMLLQPILKWIPIWYDVKLVFVA 79

Query: 80  YLWYPKTKGTTYVYDSFFKPYVAKH 104
           +L  P+ +G  ++Y+ F +  + KH
Sbjct: 80  WLVLPQFRGAAFIYEKFVREQIWKH 104


>GSVIVT01000808001 assembled CDS
          Length = 134

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 43  WCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFIIYLWYPKTKGTTYVYDSFFKPYV 101
           W  YWIL + +T+ E      ++W+P +S  KL F ++L  P   G  Y+YD F + YV
Sbjct: 21  WLTYWILYSFITLFELSCWQILAWLPFWSYMKLLFCLWLVLPIFNGAAYIYDHFVRKYV 79


>GSVIVT01008026001 assembled CDS
          Length = 167

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 20  AYPAYECYKTVEKNKPEIEHLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFII 79
           AYP Y   + +E   P  +    W  YW+L +++T+ E      I W+P +  AKL    
Sbjct: 27  AYPLYASIRAIETKSPVDDQQ--WLTYWVLYSMITLFELTFAKVIEWLPFWPYAKLIATC 84

Query: 80  YLWYPKTKGTTYVYDSFFKP 99
           +L  P   G  YVY+ F +P
Sbjct: 85  WLVIPYFSGAAYVYEHFVRP 104


>GSVIVT01020012001 assembled CDS
          Length = 171

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 4   CIQTNHLICGRMIFGYAYPAYECYKTVE-KNKPEIEHLRFWCQYWILVAVLTVCERIGDA 62
            +  N  +    +    YP Y   K +E K++ + +    W  YW+L +++T+ E     
Sbjct: 9   VVAKNFDVFAGPLVALVYPLYASIKAIETKSRADDQQ---WLTYWVLYSLITLFELTFAK 65

Query: 63  FISWVPMYSEAKLAFIIYLWYPKTKGTTYVYDSFFKPY 100
            + W P++  AKL    +L  P   G  YVY  F +P+
Sbjct: 66  LLEWFPIWPYAKLIATCWLVLPSFNGAAYVYKHFIRPF 103