Jatropha Genome Database
- JcCB0342871.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0342871.10 - phase: 1 /pseudo/partial
(162 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01038557001 assembled CDS 226 3e-60
GSVIVT01019680001 assembled CDS 120 3e-28
GSVIVT01011429001 assembled CDS 118 1e-27
GSVIVT01027437001 assembled CDS 110 4e-25
GSVIVT01012723001 assembled CDS 81 3e-16
GSVIVT01021404001 assembled CDS 80 6e-16
GSVIVT01032233001 assembled CDS 55 2e-08
GSVIVT01003706001 assembled CDS 51 2e-07
>GSVIVT01038557001 assembled CDS
Length = 568
Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/132 (81%), Positives = 117/132 (88%), Gaps = 1/132 (0%)
Query: 9 SKKCFI-WVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVRPDCPLI 67
S+K I +TNGI+VSEWDPSSDEHI FHYSA+DLSGKVQCKIALQKEL LP+RPDCPLI
Sbjct: 318 SRKAVINGITNGIDVSEWDPSSDEHIPFHYSAEDLSGKVQCKIALQKELSLPIRPDCPLI 377
Query: 68 GFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGF 127
GFIGRLDYQKGID+IR A PELM +D+Q VMLGSG+ EEWMRV ESTYRDKFRGWVGF
Sbjct: 378 GFIGRLDYQKGIDVIRLATPELMGEDVQLVMLGSGNPEDEEWMRVMESTYRDKFRGWVGF 437
Query: 128 NVPISHRITAGC 139
NVPISHRITA C
Sbjct: 438 NVPISHRITASC 449
>GSVIVT01019680001 assembled CDS
Length = 659
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 10 KKCFIWVTNGINVSEWDPSSDEHIAFHYSADD-LSGKVQCKIALQKELGLPVRPDCPLIG 68
K + NG++V EW+PS+D+HI HY+A + K K ALQ E+GLPV + PLIG
Sbjct: 395 KATITGIVNGMDVQEWNPSTDKHIGIHYNATTVMDAKALLKEALQAEVGLPVDRNIPLIG 454
Query: 69 FIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGFN 128
FIGRL+ QKG D++ A+P+ +++D+Q V+LG+G + E+ + E Y +K G FN
Sbjct: 455 FIGRLEEQKGSDILAAAIPKFIDEDVQIVVLGTGKKAMEKQIEQLEIKYPNKAIGVAKFN 514
Query: 129 VPISHRITAGC 139
V ++H ITAG
Sbjct: 515 VSLAHMITAGA 525
>GSVIVT01011429001 assembled CDS
Length = 788
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 83/129 (64%), Gaps = 22/129 (17%)
Query: 16 VTNGINVSEWDPSSDEHIA----FHYSADDL-SGKVQCKIALQKELGLPVRPDCPLIGFI 70
+ NGI+V +W+P D ++ +YS + L +GK QCK ALQKELGLP+R D PLIGFI
Sbjct: 566 IVNGIDVKDWNPELDIYLESDGYVNYSLETLHTGKPQCKAALQKELGLPIREDVPLIGFI 625
Query: 71 GRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGFNVP 130
GRLD+QKG+DLI AVP ++ D+Q V+ + DK RGWVGF+V
Sbjct: 626 GRLDHQKGVDLIAEAVPWMVGQDVQLVI-----------------QHHDKIRGWVGFSVK 668
Query: 131 ISHRITAGC 139
++HRITAG
Sbjct: 669 MAHRITAGA 677
>GSVIVT01027437001 assembled CDS
Length = 614
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 16 VTNGINVSEWDPSSDEHIAFHYSADDLS-GKVQCKIALQKELGLPVRPDCPLIGFIGRLD 74
+ NG++V EW+P +D++I+ Y A + K+ K ALQ E GLPV + P+IGFIGRL+
Sbjct: 356 IINGMDVQEWNPLTDKYISIKYDASTVKEAKLLLKEALQAEAGLPVDRNIPVIGFIGRLE 415
Query: 75 YQKGIDLIRWAVPELMEDDIQFVMLGSGDRLYEEWMRVSESTYRDKFRGWVGFNVPISHR 134
QKG D++ A+P+ + ++Q ++LG+G + E+ + E Y D RG FNVP++H
Sbjct: 416 EQKGSDILVAAIPQFVTANVQIIVLGTGKKPMEKQLEQLEKKYPDNARGVAKFNVPLAHM 475
Query: 135 ITAGC 139
I AG
Sbjct: 476 IIAGA 480
>GSVIVT01012723001 assembled CDS
Length = 1046
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 80/133 (60%), Gaps = 7/133 (5%)
Query: 13 FIWVTNGINVSEWDPSSDEHIAFHYSADDL-SGKVQCKIALQKELGLPVRPDCPLIGFIG 71
F + NGI++ WDP +D+ I Y +D++ GK K ALQ+ LGL + D PL+G I
Sbjct: 799 FHGILNGIDLDIWDPYNDKFIPVPYISDNVVEGKRAAKEALQQRLGLK-KSDFPLVGIIT 857
Query: 72 RLDYQKGIDLIRWAVPELMEDDIQFVMLGSG--DRLYEEWMRVS---ESTYRDKFRGWVG 126
RL +QKGI LI+ A+ +E + Q V+LGS R+ +++ ++ S++ D+ R +
Sbjct: 858 RLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLCLT 917
Query: 127 FNVPISHRITAGC 139
++ P+SH I AG
Sbjct: 918 YDEPLSHLIYAGA 930
>GSVIVT01021404001 assembled CDS
Length = 1011
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 11 KCFIWVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLP-VRPDCPLIGF 69
K FI + NGI+ WDP++D ++ ++A+DL GK + K AL+K LGL PL+G
Sbjct: 759 KKFIGILNGIDTDAWDPATDVYLKSQFNANDLQGKAENKEALRKHLGLSYADTRRPLVGC 818
Query: 70 IGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSG 102
I RL QKGI LIR A+ +E QFV+LGS
Sbjct: 819 IARLVPQKGIHLIRHAIYRTLELGGQFVLLGSS 851
>GSVIVT01032233001 assembled CDS
Length = 608
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 1 WFT*AVKQSKKCFIWVTNGINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPV 60
W + ++ + V NGI+ + W+P++D + ++A + GK CK +Q+ LGL +
Sbjct: 342 WLASTLILNRDKYYGVLNGIDTAMWNPATDVFLPSKFNARNTEGKKICKYYVQRGLGLIL 401
Query: 61 R------------PDCPLIGFIGRLDYQKGIDLIRWAVPELMEDDIQFVMLGSGD 103
+ PLI I RL QKG+ LI A+ ++ E Q ++LG
Sbjct: 402 KGTSASKLINEMENKVPLIVCISRLVAQKGLHLITHAIKQVEERGGQIIVLGKAS 456
>GSVIVT01003706001 assembled CDS
Length = 769
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 19 GINVSEWDPSSDEHIAFHYSADDLSGKVQCKIALQKELGLPVRPDCPLIGFIGRLDYQKG 78
G + WDPS D+ + +Y+AD++ GK CK+ALQ+ LGL L+G I
Sbjct: 539 GFDKFTWDPSRDKFLPENYTADNMKGKAVCKVALQQHLGLTEHASVILVGCIFSEVSDVD 598
Query: 79 IDLIRWAVPELMEDDIQFVM 98
++ ++ V D+QFV
Sbjct: 599 VENLKEVVLIASRRDVQFVF 618