Jatropha Genome Database

JcCB0342561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342561.10 + phase: 0 
         (618 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       437   e-123
GSVIVT01003228001 assembled CDS                                       315   4e-86

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/477 (48%), Positives = 297/477 (62%), Gaps = 54/477 (11%)

Query: 142 KDKLLDGLILPGFGERSCLSRYQSILYRRISPHKPSPFLLSKLRDYEGLHKRCGPHSISY 201
           KDKLL GL+  GF ERSCLSRYQS LYR+   HKPS +LLSKLR YE LHKRCGP++ SY
Sbjct: 95  KDKLLGGLLDAGFNERSCLSRYQSALYRKELLHKPSSYLLSKLRSYEALHKRCGPYTESY 154

Query: 202 NRTLKVLKSSHVGITRECKYIVWRPDNGLGNRMASMASSFLYALLSNRVLLVDHGTDMAD 261
           NRTLK L+        +C Y+VW   +GLGNR+ ++AS+FLYA+L+NRVLLVD G DM D
Sbjct: 155 NRTLKQLQLGQHMEQSDCNYLVWISFSGLGNRILTLASAFLYAILTNRVLLVDPGADMPD 214

Query: 262 LFCEPFPNTSWLLPKDFPLRNQFHNSQLRYAHSLRGMLE-KGRINKSMEATPPYLYLTLK 320
           LFCEPFP  SWLLP DFPL+N+F++   +       ML+ K   + S    PPY+YL L 
Sbjct: 215 LFCEPFPEVSWLLPLDFPLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSILPPYVYLHLV 274

Query: 321 KREDNLDKQVFYCDQSQVLLQKVPWLILLSEQYFVPSFFLIPSFKEEVSKLFPEKETVFH 380
              D+ DK +F+C+Q Q  L+K+P LI+ ++ YFVPS FLIPSF++E+            
Sbjct: 275 HDYDDHDK-MFFCNQDQSFLRKIPCLIIKTDNYFVPSLFLIPSFEQEL------------ 321

Query: 381 HLGRYLFNPSNRVWRQLITRFYDAYLAKADKRVGLQIRVFHANAAHIQTVMDQISECTVK 440
                                                 +F       Q V+DQI  CT+ 
Sbjct: 322 --------------------------------------IFDTGIGPFQHVLDQIIACTMT 343

Query: 441 KKLLPKVDTTKSASSSTKNQKPSKVILVASLYSEFYMNLSNMYLAKPDLSGEVIGVYQPS 500
           + LLP+++  +   SS  ++K SK +L+ SL + ++  + NMY   P ++GEVIGVYQPS
Sbjct: 344 ENLLPEINMREPVVSSYGHKK-SKAVLMTSLSAGYFEKVRNMYWEHPTVTGEVIGVYQPS 402

Query: 501 QEGYQHRGDNIHNMKAWAEIYLLSLCDVLVTSAWSTFGYVAQSLGGLKPWILQKPKLAGH 560
            E YQ      HN KAWAE+YLLSL DVLVTS+WSTFGYVAQ LGGLKPWIL KP+    
Sbjct: 403 HEEYQQTEKQNHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILYKPE-NQT 461

Query: 561 GIFVPCKRATSMEPCFHYPFSYDCKSRNNLDAAALVPYIRQCEDRELGVKLFNDHQK 617
               PC+RA SMEPCFH P  YDCK++  +D  ALVP++R CED   G+KL +D Q+
Sbjct: 462 APDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGALVPHVRHCEDMSWGLKLVDDSQE 518


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  315 bits (807), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/261 (61%), Positives = 196/261 (75%), Gaps = 2/261 (0%)

Query: 140 MDKDKLLDGLILPGFGERSCLSRYQSILYRRISPHKPSPFLLSKLRDYEGLHKRCGPHSI 199
           M KD LL GL+  GFGE+SCLSRYQS LYR+ISP+KPS +LLS+LR YE LHK CGPH+ 
Sbjct: 79  MSKDSLLGGLLAAGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHCGPHTK 138

Query: 200 SYNRTLKVLKSSHVGITRECKYIVWRPDNGLGNRMASMASSFLYALLSNRVLLVDHGTDM 259
           SY +T+K+LKS H     +C Y+VW   +GLGNR+ ++AS+FLYALL+NRVLLVD G DM
Sbjct: 139 SYRKTIKLLKSGHSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVDRGKDM 198

Query: 260 ADLFCEPFPNTSWLLPKDFPLRNQFHNSQLRYAHSLRGMLEKGRINKSMEATPPYLYLTL 319
           ADLFCEPFP  SWLLP DFPL  +F++      H    ML+   IN S E  PP+LY+ L
Sbjct: 199 ADLFCEPFPEKSWLLPLDFPLLPKFNSINKESPHCFGKMLKNNIINSSTEQPPPFLYIYL 258

Query: 320 KKREDNLDKQVFYCDQSQVLLQKVPWLILLSEQYFVPSFFLIPSFKEEVSKLFPEKETVF 379
                + DK +F+CDQ Q LL KVPWLI+ +  YFVPS FL+PSF++E+SKLFPEKET F
Sbjct: 259 SHDYGDHDK-LFFCDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPEKETTF 317

Query: 380 HHLGRYLFNPSNRVWRQLITR 400
           HHLGRYLF+PSN+VW  LITR
Sbjct: 318 HHLGRYLFHPSNQVW-GLITR 337



 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 93/138 (67%), Gaps = 1/138 (0%)

Query: 481 NMYLAKPDLSGEVIGVYQPSQEGYQHRGDNIHNMKAWAEIYLLSLCDVLVTSAWSTFGYV 540
           NMY  +  +SGEV+ VYQPS E  Q      HN KAWAE+YLLS  + L+TSAWSTFGYV
Sbjct: 338 NMYWEQSAMSGEVVSVYQPSHEEVQQSEKQGHNRKAWAEMYLLSTTEALITSAWSTFGYV 397

Query: 541 AQSLGGLKPWILQKPKLAGHGIFVPCKRATSMEPCFHYPFSYDCKSRNNLDAAALVPYIR 600
           AQ LGG+ PWIL KP+        PC RA SMEPCFH P  YDCK++  +D  ALVP++R
Sbjct: 398 AQGLGGVTPWILYKPQ-NRTAPDPPCGRAMSMEPCFHAPPFYDCKAKTGVDTGALVPHVR 456

Query: 601 QCEDRELGVKLFNDHQKL 618
            CED   G+KL   H++L
Sbjct: 457 HCEDMSWGLKLVGRHREL 474