Jatropha Genome Database

JcCB0342441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0342441.10 + phase: 0 
         (415 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015447001 assembled CDS                                       204   4e-53
GSVIVT01015446001 assembled CDS                                       192   2e-49
GSVIVT01008730001 assembled CDS                                       129   2e-30
GSVIVT01034280001 assembled CDS                                        79   3e-15
GSVIVT01023813001 assembled CDS                                        78   8e-15

>GSVIVT01015447001 assembled CDS
          Length = 370

 Score =  204 bits (520), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 125/167 (74%), Gaps = 2/167 (1%)

Query: 3   SNTRSLQANILGAPGVRGKRVTHLSKDGLTDFMQSIIFNKQNDKEPFYVLDLGVVVSLMD 62
           S + SLQ   LGA  ++   V  +S DG T  ++SI   KQ D+EPFY+LDLG VV LMD
Sbjct: 67  SASASLQLR-LGATQLKDWDVHRVSGDGFTALIRSIS-QKQKDREPFYILDLGAVVRLMD 124

Query: 63  KWTRALPMVRPFYAVKCNPDRALLGTLASLGSNFDCASRAEIESVLSLGVSPERIVYANP 122
            W +ALP V P+YAVKCN    L+  LASLG+NFDCASRAEIE+V++LGV  ++IVYANP
Sbjct: 125 MWKQALPNVVPYYAVKCNCQPPLITALASLGANFDCASRAEIETVMALGVGAQQIVYANP 184

Query: 123 CKAESHIQYAASVGVNLTTFDSRDELDKIRKWHPLCGLLIRIKAPDD 169
           CK ESH++YAASVGVNLTTFDS  E+DKI  WH  C LL+RIKAP+D
Sbjct: 185 CKGESHLKYAASVGVNLTTFDSMQEIDKIIMWHKKCDLLLRIKAPND 231



 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 102/140 (72%), Gaps = 5/140 (3%)

Query: 272 NEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREYWINDGIYGSMNCLLYDHATVTC 331
           +E +LKI++EPGRFFAE+AFTL +NIIGKRVRGE REYWI+DGIYGS N   YD +++  
Sbjct: 231 DEKDLKIMAEPGRFFAETAFTLVSNIIGKRVRGEKREYWIDDGIYGSFNLPAYDKSSMMV 290

Query: 332 APLSCASNRGNPTCKGLKRYSSTVFGPTCDALDTVLKGHQLPELQINDWLVFPNMGAYTV 391
            PL   S   N       ++SSTVFGPTCD++D V+   QLPEL +ND LVF NMGAYT 
Sbjct: 291 KPLLGGSEWMNKA-----KFSSTVFGPTCDSMDMVVAESQLPELHMNDVLVFYNMGAYTA 345

Query: 392 AAGSNFNGFKTGAILTYLAY 411
           +AG+ FNGF   +I T+L Y
Sbjct: 346 SAGTRFNGFDISSISTFLTY 365


>GSVIVT01015446001 assembled CDS
          Length = 180

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 121/177 (68%), Gaps = 6/177 (3%)

Query: 240 MNVLNIGGGFTAGLQFDDAAVAIRSALQAYFPNEP---ELKIISEPGRFFAESAFTLATN 296
           M+VL+IGGGF     F + A  I+ A+  YFP+     +LKI++EPGRFFAE+AFTL +N
Sbjct: 1   MHVLDIGGGFQESPTFHEIAAVIKEAINDYFPSSETSEDLKIMAEPGRFFAETAFTLVSN 60

Query: 297 IIGKRVRGELREYWINDGIYGSMNCLLYDHATVTCAPLSCASNRGNPT--CKGLKRYSST 354
           IIGKRVRGE REYWI+DGIYGS N   YD +++   PL   S   N    C   K +SST
Sbjct: 61  IIGKRVRGEKREYWIDDGIYGSFNLPAYDKSSMMVKPLLGGSEWMNKAKFCSTAK-FSST 119

Query: 355 VFGPTCDALDTVLKGHQLPELQINDWLVFPNMGAYTVAAGSNFNGFKTGAILTYLAY 411
           VFGPTCD+ D V+   QLPEL +ND LVF NMGAYT +AG+ FNGF   +I T+L Y
Sbjct: 120 VFGPTCDSTDMVVAESQLPELHMNDVLVFYNMGAYTASAGTRFNGFDISSISTFLTY 176


>GSVIVT01008730001 assembled CDS
          Length = 230

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1  MGSNTRSLQANILGAPGVRGKRVTHLSKDGLTDFMQSIIFNKQNDKEPFYVLDLGVVVSL 60
          MGSN +SLQA ILGAPGVRGKRVT LSKDGLTDF+ S+I  KQ  KEPFYVLDLGVVVSL
Sbjct: 1  MGSNHKSLQA-ILGAPGVRGKRVTALSKDGLTDFVLSMISKKQELKEPFYVLDLGVVVSL 59

Query: 61 MDKWTRALPMVRPFYAVKCNPDRA 84
          M+KW+RALP+VRPFYAVK   D A
Sbjct: 60 MEKWSRALPLVRPFYAVKAVFDTA 83



 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query: 233 SRLGMPKMNVLNIGGGFTAGLQFDDAAVAIRSALQAYFPNEPELKIISEPGRFFAESAFT 292
           SRLG+P+M+VLNIGGGFT+G  FDDA  AI+S+LQAYFPNE  L II EPGR+FAESAFT
Sbjct: 84  SRLGLPRMHVLNIGGGFTSGPHFDDATSAIKSSLQAYFPNEHGLTIIGEPGRYFAESAFT 143

Query: 293 LATNIIGKRVRGELRE 308
           L TNIIGKRVR ELRE
Sbjct: 144 LVTNIIGKRVRSELRE 159


>GSVIVT01034280001 assembled CDS
          Length = 399

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 151/382 (39%), Gaps = 46/382 (12%)

Query: 43  QNDKEPFYVLDLGVVVSLMDKWTRALPMVRPF--YAVKCNPDRALLGTLASLGSNFDCAS 100
           Q +K PFY+     +    + +  AL  +R    YA+K N +  +L  L  LG      S
Sbjct: 3   QVEKRPFYLYSKPQIARNFEAYREALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVS 62

Query: 101 RAEIESVLSLGVSPERIVYANPCKAESHIQYAASVGVNLTTFDSRDELDKIRKWHPLCG- 159
             E+   L  G  P R ++    K    +  AA  GV     DS  +LD I     + G 
Sbjct: 63  GNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLDNIISAARIAGK 121

Query: 160 ---LLIRIKAPDDGGARCPL------GPKYGALAEEVKPLLQAAQAA--HLKVVGVSFHI 208
              +L+RI  PD      P         K+G   E+++  L A +A    LK+VG   H+
Sbjct: 122 KVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 180

Query: 209 GSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGG-----FTAGLQFDDAAVAIR 263
           GS  T    +R                G  +++ LNIGGG     + AG         I 
Sbjct: 181 GSTITKVDIFRDAAVLMVNYIDEIRAQGF-EISYLNIGGGLGIDYYHAGAVLPTPRDLID 239

Query: 264 SALQAYFPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREYWINDGIYGSMNCLL 323
           +  +     +  L +I EPGR    +   L   +IG +  G  + + + DG   SM  L+
Sbjct: 240 TVRELVLSRD--LNLIIEPGRSLIANTCCLVNRVIGVKTNGT-KNFVVIDG---SMAELI 293

Query: 324 -------YDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALDTVLKGHQLPELQ 376
                  Y H  +   P S A           +  +  V GP C++ D + K  +LP   
Sbjct: 294 RPSLYDAYQHIELVSPPPSDA-----------QISTFDVVGPVCESADFLGKDRELPTPP 342

Query: 377 INDWLVFPNMGAYTVAAGSNFN 398
               LV  + GAY ++  S++N
Sbjct: 343 RGAGLVVHDAGAYCMSMASSYN 364


>GSVIVT01023813001 assembled CDS
          Length = 399

 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 149/382 (39%), Gaps = 46/382 (12%)

Query: 43  QNDKEPFYVLDLGVVVSLMDKWTRALPMVRPF--YAVKCNPDRALLGTLASLGSNFDCAS 100
           Q +K PFY+     +    + +  AL  +R    YA+K N +  +L  L  LG      S
Sbjct: 3   QVEKRPFYLYSKPQITRNFEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVS 62

Query: 101 RAEIESVLSLGVSPERIVYANPCKAESHIQYAASVGVNLTTFDSRDELDKIRKWHPLCG- 159
             E+   L  G  P R ++    K    +  AA  GV     DS  +LD I     + G 
Sbjct: 63  GNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLDNIISAARIAGK 121

Query: 160 ---LLIRIKAPDDGGARCPL------GPKYGALAEEVKPLLQAAQAA--HLKVVGVSFHI 208
              +L+RI  PD      P         K+G   E+++  L A +A    LK+VG   H+
Sbjct: 122 KVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 180

Query: 209 GSGATNSRAYRGXXXXXXXXXXXXSRLGMPKMNVLNIGGG-----FTAGLQFDDAAVAIR 263
           GS  T    +R                G  +++ LNIGGG     + AG         I 
Sbjct: 181 GSTITKVDIFRDAAVLMVNYIDEIRAQGF-EISYLNIGGGLGIDYYHAGAVLPTPRDLID 239

Query: 264 SALQAYFPNEPELKIISEPGRFFAESAFTLATNIIGKRVRGELREYWINDGIYGSMNCLL 323
           +  +     +  L +I EPGR    +   L   + G +  G  + + + DG   SM  L+
Sbjct: 240 TVRELVLSRD--LNLIIEPGRSLIANTCCLVNRVTGVKTNGT-KNFVVIDG---SMAELI 293

Query: 324 -------YDHATVTCAPLSCASNRGNPTCKGLKRYSSTVFGPTCDALDTVLKGHQLPELQ 376
                  Y H  +   P S A           +  +  V GP C++ D + K  +LP   
Sbjct: 294 RPSLYDAYQHIELVSPPPSDA-----------QISTFDVVGPVCESADFLGKDRELPTPP 342

Query: 377 INDWLVFPNMGAYTVAAGSNFN 398
               LV  + GAY ++  S +N
Sbjct: 343 RGAGLVVHDAGAYCMSMASTYN 364