Jatropha Genome Database

JcCB0341981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341981.10 + phase: 0 /partial
         (348 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025198001 assembled CDS                                       456   e-128
GSVIVT01016266001 assembled CDS                                       360   e-100
GSVIVT01025691001 assembled CDS                                       169   1e-42
GSVIVT01008950001 assembled CDS                                        75   3e-14

>GSVIVT01025198001 assembled CDS
          Length = 546

 Score =  456 bits (1172), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/351 (66%), Positives = 263/351 (74%), Gaps = 53/351 (15%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEPDLLQNVKRVSPWLVELVSNMP+IHLSPFSPPRKKLR+PQH DFP DGQ    SF
Sbjct: 246 VTWDEPDLLQNVKRVSPWLVELVSNMPIIHLSPFSPPRKKLRIPQHPDFPFDGQFPMSSF 305

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSSLQRFNSHSR 120
           S NPLG SSPLCCL DNTPAGIQGARHAQ+GISLSDL LNNKLQSG+             
Sbjct: 306 SSNPLGSSSPLCCLPDNTPAGIQGARHAQYGISLSDLHLNNKLQSGL------------- 352

Query: 121 ISESFVKGQTNSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPILTEQQISCSCSTD 180
                      +NE+ISCLLTMGNS+ N +KS N K  QFLLFGQPILTEQQ+S +CS+D
Sbjct: 353 ----------KNNESISCLLTMGNSSQNLEKSANEKTPQFLLFGQPILTEQQMSRTCSSD 402

Query: 181 AVSQVITGKTYSDESPEKAKIHDVLGSAPEKQTSPEKTASTGFSWQ---SSTETGLDAGH 237
           AVSQV+TGK                          +  ++ GFSW     +TE GLD GH
Sbjct: 403 AVSQVLTGK--------------------------KNLSNVGFSWHQGFQTTEIGLDTGH 436

Query: 238 CKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKGAVKQTGEEP 297
           CKVF+ESEDVGR+LDLSVL SYEEL+++LANMFGIERSE  SHVLYRDA GAVK TG+EP
Sbjct: 437 CKVFMESEDVGRSLDLSVLGSYEELYTRLANMFGIERSETFSHVLYRDATGAVKHTGDEP 496

Query: 298 FSVFTKTARRLTILMNPAGSDNNGRPWVTGMRRAENGLEASNKTGPLSIFA 348
           FS FTK A+RLTILM+ +GS+N GR W+TGMR AENGL++SNKTGPLSIFA
Sbjct: 497 FSDFTKKAKRLTILMD-SGSNNIGRTWITGMRNAENGLDSSNKTGPLSIFA 546


>GSVIVT01016266001 assembled CDS
          Length = 583

 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/326 (60%), Positives = 228/326 (69%), Gaps = 15/326 (4%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEPDLLQNVKRV+PWLVELVS++P IHLSPFSPPRKKLR+ Q  +FPL GQ+   SF
Sbjct: 263 VTWDEPDLLQNVKRVNPWLVELVSHVPSIHLSPFSPPRKKLRLQQQSEFPLVGQIPMPSF 322

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMFLSSLQRFNSHSR 120
           S N L PSSPLCC+SDN PAGIQGARHAQFG+S SDL   NKLQ G+F   LQ+    + 
Sbjct: 323 SSNALRPSSPLCCISDNIPAGIQGARHAQFGLSSSDLHF-NKLQLGLFPLGLQQQLDQTA 381

Query: 121 ISESFVKGQTNS----NENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPILTEQQISCS 176
              S + G T S    NENISCLLT+GNS  NS K++ +K   F LFGQPIL EQQ+S S
Sbjct: 382 PPSSILSGNTMSNHENNENISCLLTIGNSTQNSKKNNEIKAPYFFLFGQPILIEQQVSQS 441

Query: 177 CSTDAVSQVITGKTYSDESPEKA-KIHDVLGSAPEKQTSPEKTASTG-FSW---QSSTET 231
           CS D       G + SD +PEK     D  GSA  +    E ++  G  +W      T  
Sbjct: 442 CSGDT-----AGISSSDGNPEKTPNFSDGSGSAFHQNGPQESSSDEGLLTWYKDHQKTNL 496

Query: 232 GLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKGAVK 291
           GL+ GHCKVF+ESEDVGRTLDLS+L SYEEL+ KLANMFGIER+EMLS+VLYRD  G VK
Sbjct: 497 GLETGHCKVFMESEDVGRTLDLSILGSYEELYRKLANMFGIERAEMLSNVLYRDEAGIVK 556

Query: 292 QTGEEPFSVFTKTARRLTILMNPAGS 317
             G+ PF  F KTARRLTIL + A +
Sbjct: 557 HIGDAPFGEFLKTARRLTILADSAAT 582


>GSVIVT01025691001 assembled CDS
          Length = 580

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 90/108 (83%), Gaps = 1/108 (0%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQWQSF 60
           VTWDEPDLLQNVKRVSPWLVELVSNMP IHL+ FSPPRKKLR PQ+ DFPLD Q    +F
Sbjct: 329 VTWDEPDLLQNVKRVSPWLVELVSNMPSIHLTHFSPPRKKLRFPQYPDFPLDAQFSMPTF 388

Query: 61  SGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDLQLNNKLQSGMF 108
           S N +GPS+P  CLSDN PAG+QGARHAQ+G+SLSD   +NK QSG+F
Sbjct: 389 SSNLVGPSNPFGCLSDNIPAGMQGARHAQYGLSLSDPH-HNKFQSGLF 435



 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 1/93 (1%)

Query: 229 TETGLDAGHCKVFLESEDVGRTLDLSVLSSYEELHSKLANMFGIERSEMLSHVLYRDAKG 288
           TE  L+ GHCKVF+ESEDVGRTLDLS+L+SY+EL  KLA MF IE SEM +HVLYRDA G
Sbjct: 485 TEPNLETGHCKVFMESEDVGRTLDLSLLTSYDELCGKLAKMFTIEDSEMRNHVLYRDATG 544

Query: 289 AVKQTGEEPFSVFTKTARRLTILMNPAGSDNNG 321
           AVK  G+EPFS FTKTA+RLTILM+ + SDN G
Sbjct: 545 AVKHIGDEPFSDFTKTAKRLTILMD-SSSDNVG 576


>GSVIVT01008950001 assembled CDS
          Length = 320

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 11/193 (5%)

Query: 1   VTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPPRKKLRVPQHFDFPLDGQLQ-WQS 59
           VTWDEP++LQNV RVSPW VELV  MP        PP K+ R+ Q  + P DG+ + +  
Sbjct: 123 VTWDEPEVLQNVMRVSPWQVELV--MPTPPFHTTPPPAKRFRIAQSPELPSDGEGEIFFP 180

Query: 60  FSGNPLGPSSPLCCLSDNTPAGIQGARHAQFGI-SLSDLQLNNKLQSGMFLSSLQRFNSH 118
            +   +G  +P     +  PAG+QGAR   F + SLS+L   N  Q     S        
Sbjct: 181 MADTVMGILNPSLLNHNTFPAGMQGARQDSFYVSSLSNLTSENTHQMCTINSLDDMATKL 240

Query: 119 SRISESFVKGQT-------NSNENISCLLTMGNSNTNSDKSDNVKRHQFLLFGQPILTEQ 171
           + +S     G +       +S  ++    T    N + + S  V  H F LFG+ I  +Q
Sbjct: 241 NTVSTELNIGSSLSDNLSPDSQGSVHFFGTKPVGNQDGNSSTKVGIHSFQLFGKVIHIKQ 300

Query: 172 QISCSCSTDAVSQ 184
            +  +CS D  ++
Sbjct: 301 PVEGNCSADGCTE 313