Jatropha Genome Database

JcCB0341751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341751.10 - phase: 0 
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037915001 assembled CDS                                       461   e-130
GSVIVT01037913001 assembled CDS                                       438   e-123

>GSVIVT01037915001 assembled CDS
          Length = 419

 Score =  461 bits (1185), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/292 (73%), Positives = 241/292 (82%)

Query: 1   MAFSEFRPLDEKALIEYIKATPVLSNKIGNEFDNLEVKEVGDGNLNFVYIVIGSAGSFVI 60
           MA S FRPLD+K+LIEYIKATP LS+K+ N+ D L++KEVGDGNLNFVYIVI S+GSFVI
Sbjct: 1   MASSGFRPLDDKSLIEYIKATPALSSKLANQLDGLQIKEVGDGNLNFVYIVISSSGSFVI 60

Query: 61  KQALPYIRLIGESWPMTKERAYFEGRALKEHGKLSPEHVPEVYHFDRTMSLIAMRYLEPP 120
           KQALPYIR IGESWPMTKERAYFE  AL+E  +   +HVPEVYHFDR M+LI MRYLEPP
Sbjct: 61  KQALPYIRCIGESWPMTKERAYFEATALREQRRWCSDHVPEVYHFDREMALIGMRYLEPP 120

Query: 121 HIILRKGLIAGVKYPHLAEHISDYMARXXXXXXXXXXXXXEHKRVVAEFCGNVELCRLTE 180
           HIILRKGLIAG++YP LAEH+S++MAR             EHKR VAEFCGNVELCRLTE
Sbjct: 121 HIILRKGLIAGIEYPLLAEHMSEFMARTLFFTSLLYHDTTEHKRAVAEFCGNVELCRLTE 180

Query: 181 QVVFSDPYKVSEYNRWTSPYLDQDAVAVREDNILKLEIAELKSTFCEQAQALIHGDLHXX 240
           QVVFSDPYKVS+YNRWTSPYLD+DA AVREDNILKLE+AELKS FCE++QAL+HGDLH  
Sbjct: 181 QVVFSDPYKVSQYNRWTSPYLDRDAEAVREDNILKLEVAELKSMFCERSQALVHGDLHTG 240

Query: 241 XXXXXXXXXXXIDPEFAFYGPMGFDIGAFIGNLILAYFSQDGHASSVDDRKV 292
                      IDPEF FYGPMGFDIGAF+GNLILAYF+QDGHA  V+DRK 
Sbjct: 241 SVMVTPDSTQVIDPEFGFYGPMGFDIGAFLGNLILAYFAQDGHADQVNDRKT 292


>GSVIVT01037913001 assembled CDS
          Length = 419

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 233/292 (79%)

Query: 1   MAFSEFRPLDEKALIEYIKATPVLSNKIGNEFDNLEVKEVGDGNLNFVYIVIGSAGSFVI 60
           M  S FRPLD+K+L+EYIKATP L +K+ N+   L++KEVGDGNLNFVY+VI SAGSFVI
Sbjct: 1   MTSSGFRPLDDKSLVEYIKATPALFSKLANQLHGLQIKEVGDGNLNFVYVVISSAGSFVI 60

Query: 61  KQALPYIRLIGESWPMTKERAYFEGRALKEHGKLSPEHVPEVYHFDRTMSLIAMRYLEPP 120
           KQALPYIR IGESWPMTK+RAYFE  AL+E  +    HVPEVYHFDR M++I MRYLEPP
Sbjct: 61  KQALPYIRSIGESWPMTKDRAYFEATALREQRRWCSNHVPEVYHFDREMAVIGMRYLEPP 120

Query: 121 HIILRKGLIAGVKYPHLAEHISDYMARXXXXXXXXXXXXXEHKRVVAEFCGNVELCRLTE 180
           HIILRKGLIAG++YP LAEH+S++MAR             EHKR VAEFCGNVELCR T 
Sbjct: 121 HIILRKGLIAGIEYPLLAEHMSEFMARTLFFTSLLYHDTTEHKRAVAEFCGNVELCRHTG 180

Query: 181 QVVFSDPYKVSEYNRWTSPYLDQDAVAVREDNILKLEIAELKSTFCEQAQALIHGDLHXX 240
           QVVFSDPYKVS+YN WTSPYLD+DA AVREDNILKLE+AELKS FCE++QAL+HGDLH  
Sbjct: 181 QVVFSDPYKVSQYNWWTSPYLDRDAEAVREDNILKLEVAELKSMFCERSQALVHGDLHTG 240

Query: 241 XXXXXXXXXXXIDPEFAFYGPMGFDIGAFIGNLILAYFSQDGHASSVDDRKV 292
                      IDPEF FYGPMGFDIGAF+GNLILAYF+QDGH   V+DRK 
Sbjct: 241 SVMVTPDSTQVIDPEFGFYGPMGFDIGAFLGNLILAYFAQDGHDDQVNDRKT 292