Jatropha Genome Database
- JcCB0341721.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0341721.10 + phase: 0 /partial
(80 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01037591001 assembled CDS 164 7e-42
GSVIVT01034615001 assembled CDS 149 2e-37
GSVIVT01011026001 assembled CDS 124 9e-30
GSVIVT01019425001 assembled CDS 64 1e-11
GSVIVT01016462001 assembled CDS 62 6e-11
GSVIVT01031180001 assembled CDS 61 1e-10
GSVIVT01024867001 assembled CDS 60 2e-10
GSVIVT01027800001 assembled CDS 59 4e-10
GSVIVT01029844001 assembled CDS 57 2e-09
GSVIVT01034357001 assembled CDS 49 7e-07
>GSVIVT01037591001 assembled CDS
Length = 1049
Score = 164 bits (415), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 75/80 (93%), Positives = 79/80 (98%)
Query: 1 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQF 60
VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDS ERIFSSEPSVLQ++AP+KIFGDLHGQF
Sbjct: 698 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQIKAPVKIFGDLHGQF 757
Query: 61 GDLMRLFDEYGAPSTAGDIA 80
GDLMRLFDEYG+PSTAGDIA
Sbjct: 758 GDLMRLFDEYGSPSTAGDIA 777
>GSVIVT01034615001 assembled CDS
Length = 928
Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 74/80 (92%)
Query: 1 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQF 60
VIA LLKPRGWKPPV RQFFLDCNEI DLCD+ E IFS+EPSVL ++AP+KIFGDLHGQF
Sbjct: 578 VIAQLLKPRGWKPPVCRQFFLDCNEIGDLCDTAEHIFSNEPSVLVVKAPVKIFGDLHGQF 637
Query: 61 GDLMRLFDEYGAPSTAGDIA 80
GDLMRLFDEYG+PSTAGDIA
Sbjct: 638 GDLMRLFDEYGSPSTAGDIA 657
>GSVIVT01011026001 assembled CDS
Length = 888
Score = 124 bits (311), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 66/80 (82%)
Query: 1 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQF 60
+I+ LL+PR WK P R+FFLD E+ +LC + E+IF EP+VLQL+APIK+FGDLHGQF
Sbjct: 537 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPIKVFGDLHGQF 596
Query: 61 GDLMRLFDEYGAPSTAGDIA 80
GDLMRLFDEYG PSTAGDI
Sbjct: 597 GDLMRLFDEYGFPSTAGDIT 616
>GSVIVT01019425001 assembled CDS
Length = 319
Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 1 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQF 60
+I L+ + + P RQ L EI LC + + IF S+P++L+L APIKI GD+HGQF
Sbjct: 9 IIRRLVDAKNGRTP--RQVQLTEAEIRMLCVTSKEIFLSQPNLLELEAPIKICGDVHGQF 66
Query: 61 GDLMRLFDEYGAPSTAG 77
DL+RLF+ G P A
Sbjct: 67 SDLLRLFEYGGYPPEAN 83
>GSVIVT01016462001 assembled CDS
Length = 308
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 1 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQF 60
+I LL+ R +P +Q L NEI LC + IF + ++L+L APIKI GD+HGQ+
Sbjct: 9 IIRRLLEVRSARPG--KQVQLSENEIKQLCVASREIFLQQSNLLELEAPIKICGDIHGQY 66
Query: 61 GDLMRLFDEYGAP 73
DL+RLF+ G P
Sbjct: 67 SDLLRLFEYGGFP 79
>GSVIVT01031180001 assembled CDS
Length = 322
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 1 VIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQF 60
+I LL +G K Q L EI LC + +F S+P++LQL API+I GD+HGQ+
Sbjct: 13 IIRRLLDGKGGK-----QVQLSEAEIRHLCVNARHVFLSQPNLLQLHAPIRIAGDIHGQY 67
Query: 61 GDLMRLFDEYGAPSTAG 77
DL+RLF+ G P A
Sbjct: 68 QDLLRLFEYGGFPPAAN 84
>GSVIVT01024867001 assembled CDS
Length = 301
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 24 NEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAG 77
+EI LC IF +P++L+L APIKI GD+HGQ+ DL+RLFD G P A
Sbjct: 33 SEIRQLCTVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFDYGGYPPEAN 86
>GSVIVT01027800001 assembled CDS
Length = 326
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 17 RQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAP 73
+Q L EI LC + + IF +P++L+L+AP+KI GD+HGQ+ DL+RLFD G P
Sbjct: 22 KQVQLSEAEIRQLCVASKDIFLRQPNLLELQAPVKICGDIHGQYSDLLRLFDYGGLP 78
>GSVIVT01029844001 assembled CDS
Length = 274
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 24 NEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAP 73
+EI LC + + +F S+P++L+L API + GD+HGQ+ DL+RLF+ G P
Sbjct: 4 SEIRQLCITAKDVFLSQPNLLELEAPINVCGDIHGQYSDLLRLFEYGGFP 53
>GSVIVT01034357001 assembled CDS
Length = 303
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 11 WKPPVRRQFFLDCNEIADLCDSVERIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEY 70
W V+ L +E+ LC+ V+ I E +V + +P+ + GD+HGQF DLM+LF
Sbjct: 6 WISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTG 65
Query: 71 G-APST 75
G P T
Sbjct: 66 GHVPET 71