Jatropha Genome Database

JcCB0341321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0341321.20 - phase: 0 /partial
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003913001 assembled CDS                                       146   2e-36

>GSVIVT01003913001 assembled CDS
          Length = 486

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 1   VVNISRDGIGADTSSYHSDFIRHIPLESIDPSLAIGFYCRDKDDFDEFCFLASKLADDSH 60
           VV+I R+ + ADTSSYH + IRHI L+SIDPSLAIGFYCRDKDDFD+FC  ASKLAD S+
Sbjct: 370 VVDIRRENLEADTSSYHCNIIRHICLDSIDPSLAIGFYCRDKDDFDDFCIRASKLADKSN 429

Query: 61  GAPLFTVAHSHKLPKSVGRTDTSNDNSGVQEDDSLGVMPMNDAEAP--VNEDDWQLL 115
           GAPLFTVAH H LPK +  +D  +D SG +EDDS  V+    AE     +EDDWQLL
Sbjct: 430 GAPLFTVAHIHSLPKPISCSDGMDDCSGFREDDSFDVVSNKGAEGYEHEHEDDWQLL 486