Jatropha Genome Database
- JcCB0341321.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0341321.10 + phase: 2 /partial
(214 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01038271001 assembled CDS 176 9e-45
GSVIVT01017147001 assembled CDS 68 3e-12
GSVIVT01017545001 assembled CDS 60 7e-10
GSVIVT01008033001 assembled CDS 50 8e-07
GSVIVT01024329001 assembled CDS 50 9e-07
GSVIVT01025174001 assembled CDS 50 9e-07
GSVIVT01017151001 assembled CDS 48 4e-06
GSVIVT01030561001 assembled CDS 47 5e-06
GSVIVT01006336001 assembled CDS 47 8e-06
>GSVIVT01038271001 assembled CDS
Length = 365
Score = 176 bits (445), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 24/220 (10%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D HKNAL SAEVYD E +EWR LP+M E+RDE G+++EGD+RFWVVSGY T++QG+FRS
Sbjct: 128 DSHKNALRSAEVYDAEADEWRTLPSMWEERDESQGLSWEGDSRFWVVSGYSTENQGRFRS 187
Query: 61 DAECYDPDNGVWHKITGVWPFSSTSPRGATTI--VSSVNKNEHQWRWFLGGXXXXXXXXI 118
DAECYDP+ G W K+ G+WPF S+SPRG ++ S +++HQW G I
Sbjct: 188 DAECYDPETGCWSKVEGLWPFPSSSPRGCVSVNSASGRGQSKHQWWRIAGEEQQQQQTGI 247
Query: 119 -----HQNDEIRWELIRSNPVP----DCGKNP--FVMNIGYGDNKNRVFLVXXXXXXXXX 167
++ + RW ++ S P+P G++ V G GD +R LV
Sbjct: 248 GEIREYEREAERWRVLSSIPLPHPEFGLGRSSKCLVSLDGGGDGNSRRMLV--------- 298
Query: 168 XXXXXXXXXXXTFILDKDCNNGRTKWNHVHTPAEFSGFPF 207
FIL+++ + G+TKWNH+H P +F+GFP+
Sbjct: 299 -MSSGGEGKAGAFILERN-DKGKTKWNHIHVPPQFTGFPY 336
>GSVIVT01017147001 assembled CDS
Length = 315
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 3 HKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRSDA 62
KNAL SA VYD+ ++EW LP+M + DEC G+ G +F V+ GY T+ QG+F A
Sbjct: 174 EKNALKSALVYDVAKDEWAPLPDMARESDECKGVFHRG--KFHVIGGYCTEMQGRFERSA 231
Query: 63 ECYDPDNGVWHKITGVWPFSSTSPR 87
E +D N W K + ST PR
Sbjct: 232 EAFDFANWEWDKAEEDFLEDSTCPR 256
>GSVIVT01017545001 assembled CDS
Length = 348
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D KNAL SA YD+ ++W +P+M +RDEC + G +F V+ GY T++QG+F+
Sbjct: 175 DDDKNALRSALAYDVAEDDWLPVPDMSMERDECKVVFQRG--KFHVIGGYQTETQGRFQR 232
Query: 61 DAECYDPDNGVWHKITGVWPFSSTSPR 87
AE +D + W + ++T PR
Sbjct: 233 SAEAFDVASWQWDPVNEDLLETTTHPR 259
>GSVIVT01008033001 assembled CDS
Length = 482
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D N L+SAE+Y+ + W LP+M + R C G+ D +F+V+ G G + +
Sbjct: 292 DPRGNILSSAELYNSDTGTWVTLPSMNKPRKMCSGIFM--DRKFYVIGGIGVGNSNSL-T 348
Query: 61 DAECYDPDNGVWHKITGVWPFSSTSPRGATTIVSSVN 97
E YD + W +I ++P + S GA +V+ VN
Sbjct: 349 CGEVYDLEMRTWREIPNMFPGRNGSA-GAPPLVAVVN 384
>GSVIVT01024329001 assembled CDS
Length = 334
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D++ + L SAE+Y+ E W+ LP+M R C G F D +F+V+ G S +
Sbjct: 185 DKNGHVLKSAELYNSELGTWQTLPDMNLPRKLCSG--FFMDGKFYVIG--GMSSHTDCLT 240
Query: 61 DAECYDPDNGVWHKITGVWPFSSTSP 86
E Y+ + +W +I ++P + TSP
Sbjct: 241 CGEEYNIETRIWRRIENMYPGNMTSP 266
>GSVIVT01025174001 assembled CDS
Length = 364
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQFRS 60
D+ N L SAE+YD W +LPNM R C G F D +F+V+ G + + +
Sbjct: 170 DKSGNVLKSAELYDSSSGRWEMLPNMHSPRRLCSG--FFMDGKFYVIGGMTSPTDSL--T 225
Query: 61 DAECYDPDNGVWHKITGVWP 80
E +D W KI G++P
Sbjct: 226 CGEEFDLKTREWRKIEGMYP 245
>GSVIVT01017151001 assembled CDS
Length = 422
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 1 DRHKNALNSAEVYDIERNEWRILPNMIEDRDECHG 35
D KNAL SA VYD+ ++EW LP+M +RDEC G
Sbjct: 281 DGEKNALKSALVYDVAKDEWAPLPDMARERDECKG 315
>GSVIVT01030561001 assembled CDS
Length = 369
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 7 LNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYGTDSQGQF-------R 59
+++AEVYD +EW+ LPNM R +C G+ + G + V+ G+ R
Sbjct: 157 ISAAEVYDPALDEWKPLPNMSTLRYKCVGVTWLG--KIHVLGGFAQRKDSDITVPYTLER 214
Query: 60 SDAECYDPDNGVWHKITGVW 79
S E YD WH + G+W
Sbjct: 215 SSGEVYDSQRAKWHFMVGMW 234
>GSVIVT01006336001 assembled CDS
Length = 284
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 6 ALNSAEVYDIERNEWRILPNMIEDRDECHGMAFEGDNRFWVVSGYG-------TDSQGQF 58
++ AE +D N W LPNM R +C G+ ++G + VV G+ T
Sbjct: 83 GISLAEAFDPALNVWTPLPNMSTLRYKCVGVTWQG--KILVVGGFADRLDSDRTVPYALE 140
Query: 59 RSDAECYDPDNGVWHKITGVWPF 81
RS AE +DP +G W + G+W
Sbjct: 141 RSSAELFDPSSGRWDLMVGMWQL 163