Jatropha Genome Database

JcCB0340941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.20 - phase: 1 /partial
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003183001 assembled CDS                                       275   4e-75
GSVIVT01010995001 assembled CDS                                       189   6e-49
GSVIVT01021910001 assembled CDS                                       185   9e-48
GSVIVT01033011001 assembled CDS                                       181   1e-46
GSVIVT01009126001 assembled CDS                                       172   5e-44
GSVIVT01016368001 assembled CDS                                        86   1e-17

>GSVIVT01003183001 assembled CDS
          Length = 553

 Score =  275 bits (704), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/153 (86%), Positives = 140/153 (91%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P   +FGAVVK C KLQRL+VSGLLTDLTFEYIG+YAKNLETLSVAFAGSSDWGMQCVL 
Sbjct: 401 PMDEAFGAVVKNCTKLQRLAVSGLLTDLTFEYIGKYAKNLETLSVAFAGSSDWGMQCVLS 460

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GC KLRKLEIRDCPFGN ALLSGLEKYESMRSLWMS+C VTMN CR LA++MPRLNVEVM
Sbjct: 461 GCSKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVM 520

Query: 123 KEEWSDDSQADKVYVYRSVAGPRRDAPPSVLTL 155
           K+E SDDSQADKVYVYRSVAGPRRDAPP VLTL
Sbjct: 521 KDEESDDSQADKVYVYRSVAGPRRDAPPFVLTL 553


>GSVIVT01010995001 assembled CDS
          Length = 466

 Score =  189 bits (479), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 113/160 (70%), Gaps = 5/160 (3%)

Query: 1   MNPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCV 60
           + P    FGA+V+ C +L RLS+SGLLTD  FEYIG +AK LE LSVAFAG  D G+  V
Sbjct: 303 LEPLDVGFGAIVEHCKELHRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDGDLGLHHV 362

Query: 61  LGGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVE 120
           L GC  LRKLEIRDCPFG+ ALL+   K E+MRSLWMSSC V+   C+LL ++MPRLNVE
Sbjct: 363 LSGCKSLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLGQKMPRLNVE 422

Query: 121 VMKEEWSDDSQ-----ADKVYVYRSVAGPRRDAPPSVLTL 155
           VM E    DS+      +K+Y+YRSVAGPR D P  V T+
Sbjct: 423 VMDERGRPDSRPESCSVEKLYIYRSVAGPRSDMPRFVWTM 462


>GSVIVT01021910001 assembled CDS
          Length = 471

 Score =  185 bits (469), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 113/158 (71%), Gaps = 5/158 (3%)

Query: 3   PWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLG 62
           P    FGA+V+ C  L+RLS+SGLLTD  FEYIG + K LE LS+AFAG SD G+  VL 
Sbjct: 305 PLDVGFGAIVEHCKDLKRLSLSGLLTDRVFEYIGSHGKKLEMLSLAFAGDSDLGLHHVLS 364

Query: 63  GCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVM 122
           GC  LRKLEIRDCPFG+ ALL+   K E+MRSLWMS+C+V+   C+LL ++MPRLNVEV+
Sbjct: 365 GCKSLRKLEIRDCPFGDKALLANAAKLETMRSLWMSACQVSYRACKLLGQKMPRLNVEVI 424

Query: 123 KEEWSDDSQAD-----KVYVYRSVAGPRRDAPPSVLTL 155
            E+   DS  D     K+Y+YR+V+GPR D P  V T+
Sbjct: 425 AEQGHPDSSPDEYPVEKLYIYRTVSGPRSDMPSFVWTM 462


>GSVIVT01033011001 assembled CDS
          Length = 534

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 121/162 (74%), Gaps = 6/162 (3%)

Query: 1   MNPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCV 60
           M P    FGA+V++C  L+RLS+SGLLTD  F YIG YA+ LE LS+AFAG SD GM  V
Sbjct: 303 MQPLDEGFGAIVQSCKGLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGDSDKGMLYV 362

Query: 61  LGGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVE 120
           L GC KLRKLEIRDCPFGN ALL+ + KYE+MRSLWMSSC+VT+ GC++LA +MPR+NVE
Sbjct: 363 LNGCKKLRKLEIRDCPFGNVALLTDVGKYETMRSLWMSSCEVTLGGCKVLAEKMPRINVE 422

Query: 121 VMKEE------WSDDSQADKVYVYRSVAGPRRDAPPSVLTLS 156
           ++ E       + D  + DK+++YR++ GPR+DAP  V T S
Sbjct: 423 IINEYDQMEFGFDDRQKVDKMFLYRTLVGPRKDAPHFVWTFS 464


>GSVIVT01009126001 assembled CDS
          Length = 552

 Score =  172 bits (436), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 108/155 (69%), Gaps = 1/155 (0%)

Query: 2   NPWMRSFGAVVKTCNKLQRLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVL 61
            P    FGA+V  C KL RL++SGLLTD  F YIG+Y K + TLSVAFAG SD G++ VL
Sbjct: 398 EPMDEGFGAIVMNCKKLTRLAISGLLTDKAFSYIGKYGKLVRTLSVAFAGDSDMGLKYVL 457

Query: 62  GGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEV 121
            GCPKL+KLEIRD PFG+AAL SGL  Y +MR LWMSSC+++  GC  +AR MP L VEV
Sbjct: 458 EGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLSRQGCEEIARAMPGLVVEV 517

Query: 122 MKEEWSDDSQADKV-YVYRSVAGPRRDAPPSVLTL 155
           ++ E  +D    ++ Y+YRS+  PR DAP  V  L
Sbjct: 518 IRNENEEDKDGFEILYMYRSLERPRIDAPEFVTIL 552


>GSVIVT01016368001 assembled CDS
          Length = 598

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 13/160 (8%)

Query: 10  AVVKTCNKLQRLSV---SGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLGGCPK 66
           A+++ C KL+R ++   SG LTD+   YIG+Y+ N+  + + + G SD G+     GCP 
Sbjct: 432 ALLRGCQKLRRFALYLRSGGLTDVGLNYIGQYSPNVRWMLLGYVGESDAGLLEFSRGCPS 491

Query: 67  LRKLEIRDCPFGNAALLSGLEKYESMRSLWMSSCKVTMNGCRLLAREMPRLNVEVMKEEW 126
           L+KLE+R C F   AL     +  S+R LW+   + +  G  LL    P  N+E++    
Sbjct: 492 LQKLEMRGCCFSERALAVAAMQLTSLRYLWVQGYRASETGRDLLVMARPFWNIELIPSRG 551

Query: 127 SDDSQADK----------VYVYRSVAGPRRDAPPSVLTLS 156
              +  D+          +  Y S+AGPR D P +V  L 
Sbjct: 552 VTINAPDREPVSIEHPAHILAYYSLAGPRTDFPSTVTPLD 591