Jatropha Genome Database

JcCB0340941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340941.10 + phase: 0 
         (105 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014443001 assembled CDS                                       162   4e-41
GSVIVT01017066001 assembled CDS                                       101   6e-23
GSVIVT01015372001 assembled CDS                                       100   2e-22
GSVIVT01014353001 assembled CDS                                        84   1e-17
GSVIVT01018666001 assembled CDS                                        80   1e-16
GSVIVT01011685001 assembled CDS                                        78   7e-16
GSVIVT01015506001 assembled CDS                                        76   3e-15
GSVIVT01034075001 assembled CDS                                        74   9e-15
GSVIVT01008092001 assembled CDS                                        73   3e-14
GSVIVT01035125001 assembled CDS                                        69   4e-13

>GSVIVT01014443001 assembled CDS
          Length = 109

 Score =  162 bits (409), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 88/105 (83%)

Query: 1   MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
           MLEGKAV+GETDMLQTMQQDAL LAAKALD FDVTE+T+IARFIKK+FD   GPGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDVTEATEIARFIKKEFDRTHGPGWQCIV 60

Query: 61  GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCAVNQVDEANVFPALD 105
           GT+FGSFVTH +GCFIYF I S+AI+LF+ +     +AN  P L+
Sbjct: 61  GTDFGSFVTHCYGCFIYFRIASLAILLFKGSAGPEAQANQIPVLE 105


>GSVIVT01017066001 assembled CDS
          Length = 95

 Score =  101 bits (252), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 65/91 (71%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKA++ +TDM   MQ  A+  A++ALDI+DV +   IA +IKK+FDM+ G GWQC+V
Sbjct: 1  MLEGKALIEDTDMPVKMQIQAMACASQALDIYDVLDYKSIAAYIKKEFDMIYGTGWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFRCA 91
          G+ FG F TH  G FIYF + ++  ++F+ A
Sbjct: 61 GSNFGCFFTHSKGTFIYFTLETLNFLIFKGA 91


>GSVIVT01015372001 assembled CDS
          Length = 96

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 64/89 (71%)

Query: 1  MLEGKAVVGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIV 60
          MLEGKAV+ E+DM   MQ+ A+  A++ALDI+DV++   IA  IKK+FD L G GWQC+V
Sbjct: 1  MLEGKAVIKESDMPVKMQKQAMASASQALDIYDVSDCVSIAAHIKKEFDGLFGCGWQCVV 60

Query: 61 GTEFGSFVTHYHGCFIYFNIGSIAIMLFR 89
          G+ FG F TH  G FIYF + ++  ++F+
Sbjct: 61 GSNFGCFFTHSQGTFIYFAMETLNFLVFK 89


>GSVIVT01014353001 assembled CDS
          Length = 204

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 11  TDMLQTMQQDALHLAAKALD-IFDVTES--TDIARFIKKDFDMLRGPGWQCIVGTEFGSF 67
           +DM   MQ  AL  +   +D I D T    + IAR +KK+FD + GP W C+ GT FGSF
Sbjct: 112 SDMPPAMQDHALRYSRSLVDAIPDATRPNPSHIARALKKEFDSVYGPAWHCVAGTSFGSF 171

Query: 68  VTHYHGCFIYFNIGSIAIMLFRCAVNQVDEAN 99
           VTH  G F+YF+I S+ I+LF+  V  V E  
Sbjct: 172 VTHSPGGFVYFSIDSLYILLFKTEVKLVTEPR 203


>GSVIVT01018666001 assembled CDS
          Length = 153

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 12  DMLQTMQQDALHLAAKALDIF--DVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVT 69
           DM   MQ+ A   A   LD    +V   T +A  +KK+FD L GP W CIVG  FGSFVT
Sbjct: 63  DMSAAMQERAFRYARSLLDAHSDNVPTPTHLAMRLKKEFDALYGPAWHCIVGKSFGSFVT 122

Query: 70  HYHGCFIYFNIGSIAIMLFRCAVNQV 95
           H  G F+YF+I  ++ +LF+  V  +
Sbjct: 123 HSSGGFVYFSIDKLSFLLFKTEVRPI 148


>GSVIVT01011685001 assembled CDS
          Length = 125

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 8   VGETDMLQTMQQDALHLAAKALDIFD-VTESTDIARFIKKDFDMLRGPGWQCIVGTEFGS 66
           V  +DM   +Q  A   A   LD      +S  +A  +KK+FD L GP W CIVGT FGS
Sbjct: 35  VRASDMPLALQSRAFKCARDNLDAMPGKLDSKRLALALKKEFDSLYGPAWHCIVGTSFGS 94

Query: 67  FVTHYHGCFIYFNIGSIAIMLFRCAVNQVD 96
           +VTH  G F+YF+I  + I+LF+ AV  +D
Sbjct: 95  YVTHSLGGFLYFSIDKVYILLFKTAVEPLD 124


>GSVIVT01015506001 assembled CDS
          Length = 181

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query: 11  TDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTH 70
           TDM   MQ  A   A +  D  +   S  +A  IKK+FD + GP W CIVG+ FGSFVTH
Sbjct: 93  TDMPGFMQVHAFRCARRTFDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTH 152

Query: 71  YHGCFIYFNIGSIAIMLFRCAVNQ 94
             G F+YF++  + I++F+  V +
Sbjct: 153 STGGFLYFSMEKLFILVFKTKVQR 176


>GSVIVT01034075001 assembled CDS
          Length = 101

 Score = 74.3 bits (181), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%)

Query: 13 MLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTHYH 72
          M + MQ   L LA +ALD+ +V +   IA +IK+ FD   GP W C+VG +FGS +TH  
Sbjct: 1  MPEAMQNHCLELAYQALDLHEVCDRQAIAHYIKQKFDEAYGPAWHCVVGVDFGSCITHLC 60

Query: 73 GCFIYFNIGSIAIMLFR 89
          G FI+F + ++  ++F+
Sbjct: 61 GNFIFFRVETMEFLVFK 77


>GSVIVT01008092001 assembled CDS
          Length = 309

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 8   VGETDMLQTMQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSF 67
           V   DM   MQ  A+  A  A D  +   S  +A  +KK+FD + GP W CIVGT FGSF
Sbjct: 220 VVSVDMPPFMQIHAVDCARNAYDSLEKFTSKTLAMTLKKEFDGVYGPAWHCIVGTSFGSF 279

Query: 68  VTHYHGCFIYFNI-GSIAIMLFRCAVNQVD 96
           VTH  G F+YF +   + I+LF+ AV + D
Sbjct: 280 VTHSVGGFMYFAMDHKLYILLFKTAVQRAD 309


>GSVIVT01035125001 assembled CDS
          Length = 73

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 17 MQQDALHLAAKALDIFDVTESTDIARFIKKDFDMLRGPGWQCIVGTEFGSFVTHYHGCFI 76
          MQ++A+ +A  A +   V +  +IA +IKK+FD   GP W CIVG  FGS+VTH    F+
Sbjct: 1  MQKEAIDIAIAASENHSVEK--NIAEYIKKEFDKKHGPTWHCIVGRNFGSYVTHETNHFV 58

Query: 77 YFNIGSIAIMLFRC 90
          YF +   A++LF+ 
Sbjct: 59 YFYLDQKAVLLFKS 72