Jatropha Genome Database

JcCB0340161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340161.20 - phase: 2 /pseudo/partial
         (308 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000084001 assembled CDS                                       325   1e-89
GSVIVT01010359001 assembled CDS                                       195   2e-50
GSVIVT01025340001 assembled CDS                                       182   2e-46
GSVIVT01025341001 assembled CDS                                       179   1e-45
GSVIVT01016738001 assembled CDS                                       179   2e-45
GSVIVT01025339001 assembled CDS                                       177   8e-45
GSVIVT01025342001 assembled CDS                                       155   2e-38
GSVIVT01032029001 assembled CDS                                       123   1e-28
GSVIVT01017943001 assembled CDS                                       115   3e-26
GSVIVT01005215001 assembled CDS                                       111   4e-25
GSVIVT01000083001 assembled CDS                                        89   3e-18

>GSVIVT01000084001 assembled CDS
          Length = 900

 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 152/205 (74%), Positives = 174/205 (84%)

Query: 104 RKDDMVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAI 163
           + D+MV KD ELQSWWKE+RE GHGDKK+EPWWPKMHT +ELIE+CTIIIW+ASALHAA+
Sbjct: 696 KTDEMVQKDSELQSWWKEVREEGHGDKKDEPWWPKMHTVKELIETCTIIIWVASALHAAV 755

Query: 164 NFGQYPYGGYLPNRPSISRRFLPEKDTPEYEELKSNPEKAFLKTITAQLQTVLGISLIEI 223
           NFGQYPY GYLPNRP+ISRRF+PE+ TPEYEELKSNP+KAFLKTITAQLQT+LGISLIEI
Sbjct: 756 NFGQYPYAGYLPNRPTISRRFMPEEGTPEYEELKSNPDKAFLKTITAQLQTLLGISLIEI 815

Query: 224 LSRHASDEVYLGQRDTPEWTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVL 283
           LSRH+SDEVYLGQRDTPEWT D  PL+AF++F              N + + KNRVGPV 
Sbjct: 816 LSRHSSDEVYLGQRDTPEWTLDTTPLKAFEKFGRKLADIEERIIDRNGNERFKNRVGPVK 875

Query: 284 MTYTLLVPSSEVGLTGRGIPNSVSI 308
           + YTLL P+SE GLTG+GIPNSVSI
Sbjct: 876 IPYTLLYPTSEGGLTGKGIPNSVSI 900


>GSVIVT01010359001 assembled CDS
          Length = 920

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 128/204 (62%), Gaps = 2/204 (0%)

Query: 107 DMVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFG 166
           + V  D ELQ+WW EI+  GH DK+ E WWPK++T+E L    T +IWIAS  HAAINFG
Sbjct: 717 NTVTSDLELQAWWNEIKNEGHYDKRNESWWPKLNTKEHLSGILTTMIWIASGQHAAINFG 776

Query: 167 QYPYGGYLPNRPSISRRFLPEKDTPEYEELKSNPEKAFLKTITAQLQTVLGISLIEILSR 226
           QYP+GGY+PNRP++ R+ +P +D   YE+   NP+  FL ++  QLQ    +++ + LS 
Sbjct: 777 QYPFGGYVPNRPTLMRKLIPHEDDSAYEKFLLNPQSTFLSSLPTQLQATKVMAVQDTLST 836

Query: 227 HASDEVYLGQRD--TPEWTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVLM 284
           H+ DE YLGQ       W  D + L+ FK+F              NK++ LKNR G  + 
Sbjct: 837 HSPDEEYLGQTHHLHSHWIKDPEVLDMFKKFSAKLEEIEEIIKGRNKNIHLKNRNGAGIP 896

Query: 285 TYTLLVPSSEVGLTGRGIPNSVSI 308
            Y LL+PSS  G+TGRGIPNS+SI
Sbjct: 897 PYELLLPSSGPGVTGRGIPNSISI 920


>GSVIVT01025340001 assembled CDS
          Length = 872

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 124/204 (60%), Gaps = 4/204 (1%)

Query: 108 MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
           MV  DPELQ+WW EIR  GH DKK+EPWWP + T E+LI   T I+W+ASA  +A+NFGQ
Sbjct: 670 MVQSDPELQAWWTEIRTKGHEDKKDEPWWPVLKTPEDLIGIITTIVWVASAHDSAVNFGQ 729

Query: 168 YPYGGYLPNRPSISRRFLPEKDTPEYEELK---SNPEKAFLKTITAQLQTVLGISLIEIL 224
           Y + GY PNRP+I+R  +P +D P  E  K    NPE   L    +Q+Q    ++++++L
Sbjct: 730 YAFAGYFPNRPTIARTNMPSED-PTREGWKRFLDNPEFELLVCFPSQIQATKVMAILDVL 788

Query: 225 SRHASDEVYLGQRDTPEWTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVLM 284
           S H+ DE YLG+   P W  +    EAF++F              N D  LKNR G  ++
Sbjct: 789 SNHSPDEEYLGEHMEPAWGEEPVIKEAFERFSAKLKELGVIIDSRNADDSLKNRGGAGVV 848

Query: 285 TYTLLVPSSEVGLTGRGIPNSVSI 308
            Y LL P SE G+TG+G+P S+SI
Sbjct: 849 PYELLKPFSEAGVTGKGVPYSISI 872


>GSVIVT01025341001 assembled CDS
          Length = 2408

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 121/204 (59%), Gaps = 4/204 (1%)

Query: 108  MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
            MV  DPELQ+WW EIR  GH DKK+EPWWP + T E+LI     I W+ASA H+A+NFGQ
Sbjct: 2206 MVQSDPELQAWWTEIRTKGHEDKKDEPWWPVLQTPEDLIGIIATIAWVASAHHSAVNFGQ 2265

Query: 168  YPYGGYLPNRPSISRRFLPEKDTPEYEELK---SNPEKAFLKTITAQLQTVLGISLIEIL 224
            Y +  Y PNRP+I+R  +P +D P  E  K    NP    L    +Q+Q    I+++++L
Sbjct: 2266 YAFAAYFPNRPTIARTNMPSED-PTREGWKRFLDNPHFELLVCFPSQVQATKVIAILDVL 2324

Query: 225  SRHASDEVYLGQRDTPEWTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVLM 284
            S H+ DE Y+G+   P W  +    EAF++F              N D  LKNR G  ++
Sbjct: 2325 SNHSPDEEYIGEYMEPAWGEEPDIKEAFERFSARLKELEVIIDARNADNSLKNRGGAGVV 2384

Query: 285  TYTLLVPSSEVGLTGRGIPNSVSI 308
             Y LL P SE G+TG+G+P S+SI
Sbjct: 2385 PYELLKPFSEAGVTGKGVPYSISI 2408



 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 37/129 (28%)

Query: 108  MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
            MV  DPELQ+WW EIR                                      A+NFGQ
Sbjct: 1379 MVQSDPELQAWWTEIRT------------------------------------KAVNFGQ 1402

Query: 168  YPYGGYLPNRPSISRRFLPEKDTPEYEELKSNPEKAFLKTITAQLQTVLGISLIEILSRH 227
            Y + GY PNRP+I+R  +P +D P  EE K  P+   L    +Q+Q    ++++++LS H
Sbjct: 1403 YAFAGYFPNRPTIARINMPCED-PTKEEWKQYPDSELLVCFPSQIQATKVMAILDVLSNH 1461

Query: 228  ASDEVYLGQ 236
            + DE YLG+
Sbjct: 1462 SPDEEYLGK 1470



 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 35/51 (68%)

Query: 107 DMVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIAS 157
           +MV  DPELQ+WW EI+  GH DKK+EPWWP + T  +LI   T I W +S
Sbjct: 639 NMVQSDPELQAWWTEIQTKGHEDKKDEPWWPNLQTPNDLIGIITTITWHSS 689


>GSVIVT01016738001 assembled CDS
          Length = 927

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 1/200 (0%)

Query: 108 MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
           +VI D ELQ+W+ E   VGH D +   WWP + T ++L    T +IW+ASA HAA+NFGQ
Sbjct: 715 VVISDRELQAWYSEAVNVGHADLRHAAWWPSLSTPDDLASILTTLIWLASAQHAALNFGQ 774

Query: 168 YPYGGYLPNRPSISRRFLPEKDTPEYEELKSNPEKAFLKTITAQLQTVLGISLIEILSRH 227
           YPYGGY+PNRP + RR +PE   PEY    ++P++ +L  +   LQ+   +++++ LS H
Sbjct: 775 YPYGGYVPNRPPLMRRLIPEPTDPEYTNFLNDPQRYYLSALPGVLQSTSFMAVVDTLSTH 834

Query: 228 ASDEVYLGQRDTPE-WTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVLMTY 286
           + DE Y+G+R+ P  W+ D + +EA  +F              N +   +NR G  ++ Y
Sbjct: 835 SPDEEYIGERNHPSTWSGDAEIIEASYEFSAEIRRIEKEIEKRNAEFSRRNRCGAGVLPY 894

Query: 287 TLLVPSSEVGLTGRGIPNSV 306
            LL PSS  G+T RGIPN++
Sbjct: 895 ELLAPSSGPGVTCRGIPNTL 914


>GSVIVT01025339001 assembled CDS
          Length = 901

 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 118/203 (58%), Gaps = 2/203 (0%)

Query: 108 MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
           MV  D ELQ+WW EIR  GH DKK+E WWP + T ++LI   T ++W+ S  HAA+NFGQ
Sbjct: 699 MVKSDAELQAWWTEIRTRGHEDKKDETWWPDLKTPQDLIGIVTTMVWVTSGHHAAVNFGQ 758

Query: 168 YPYGGYLPNRPSISRRFLPEKDTPE--YEELKSNPEKAFLKTITAQLQTVLGISLIEILS 225
           Y Y GY PNRP+I+R  LP +D  E  +      PE   L  +  QLQ    ++++++LS
Sbjct: 759 YAYAGYFPNRPTIARTNLPSEDPTEEGWRRFLHKPENELLACLPTQLQAAKVLTVLDVLS 818

Query: 226 RHASDEVYLGQRDTPEWTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVLMT 285
            H+ DE YLG+   P W  D     AF++F              N+D  LKNR G  ++ 
Sbjct: 819 SHSPDEEYLGEHLEPAWGADPLIKAAFERFSGRLKEIEGIIDARNEDKNLKNRHGAGVVP 878

Query: 286 YTLLVPSSEVGLTGRGIPNSVSI 308
           Y LL P S  G+TG+G+P S+SI
Sbjct: 879 YELLKPFSGAGVTGKGVPYSISI 901


>GSVIVT01025342001 assembled CDS
          Length = 817

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 109/186 (58%), Gaps = 6/186 (3%)

Query: 108 MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
           MV  DPELQ+WW EIR  GH DKK+EPWWP + T ++LI   T I W+ S  H+A+NFGQ
Sbjct: 610 MVQSDPELQAWWTEIRTKGHEDKKDEPWWPNLQTPDDLIGIITTITWVTSGHHSAVNFGQ 669

Query: 168 YPYGGYLPNRPSISRRFLPEKDTPE--YEELKSNPEKAFLKTITAQLQTVLGISLIEILS 225
           Y + GY PNRPSI+R  +P ++  E  ++    NP    L    ++LQ    ++ +++LS
Sbjct: 670 YAFAGYFPNRPSIARTNMPCEEPTEEGWQRFLDNPNSELLACFPSKLQATRIMATLDLLS 729

Query: 226 RHASDEVYLGQRDTPEWTTDEKPL--EAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVL 283
            H+SDE Y+G+     W  DE+P+  EAF +F              NKD  LKNR G  +
Sbjct: 730 EHSSDEEYIGKDRKLTW--DEEPVIKEAFNRFSAKLEELERTIDDRNKDNSLKNRNGAGV 787

Query: 284 MTYTLL 289
           + Y LL
Sbjct: 788 VPYELL 793


>GSVIVT01032029001 assembled CDS
          Length = 866

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 73/117 (62%), Gaps = 4/117 (3%)

Query: 108 MVIKDPELQSWWKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
           +V  D ELQ WW E+R  GH DKK+EPWWP M T E+LI   T IIW+ +  HAA+NFGQ
Sbjct: 727 LVESDKELQGWWTEVRTKGHADKKDEPWWPVMKTPEDLIHVLTTIIWVTAGHHAAVNFGQ 786

Query: 168 YPYGGYLPNRPSISRRFLPEKDTPEYEELKS---NPEKAFLKTITAQLQTVLGISLI 221
           Y Y GY PNRP+I+R  +P +D P  EE K+    PE A LK     L+   G  ++
Sbjct: 787 YVYAGYFPNRPTIARTNMPTED-PSDEEFKNFLHKPEIALLKNTNLNLKNRTGAGVV 842


>GSVIVT01017943001 assembled CDS
          Length = 751

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 73/113 (64%), Gaps = 19/113 (16%)

Query: 196 LKSNPEKAFLKTITAQLQTVLGISLIEILSRHASDEVYLGQRDTPEWTTDEKPLEAFKQF 255
           L+ NP+ AFLKTITAQLQT+LG+SLIEILSRH++DE+YLGQRDTPEWT+D +PL AF++F
Sbjct: 658 LERNPDLAFLKTITAQLQTLLGVSLIEILSRHSTDEIYLGQRDTPEWTSDAEPLAAFERF 717

Query: 256 XXXXXXXXXXXXXMNKDVQLKNRVGPVLMTYTLLVPSSEVGLTGRGIPNSVSI 308
                        MN+D +  NR GP                   GIPNSVSI
Sbjct: 718 GSRLRGIETRINQMNQDRRWNNRFGP-------------------GIPNSVSI 751


>GSVIVT01005215001 assembled CDS
          Length = 533

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 168 YPYGGYLPNRPSISRRFLPEKDTPEYEELKSNPEKAFLKTITAQLQTVLGISLIEILSRH 227
           YPYGG++P RP + R+ +P++  P Y +   +P+  FL ++ + LQ    +++IEI+S H
Sbjct: 392 YPYGGFIPARPPLMRQLVPKEHDPVYVDFIEDPQAYFLSSLPSLLQATKFMAVIEIISAH 451

Query: 228 ASDEVYLGQR-DTPEWTTDEKPLEAFKQFXXXXXXXXXXXXXMNKDVQLKNRVGPVLMTY 286
           + DE YLG+R D   W+ D + +EAF +F              N D   +NR G  +  Y
Sbjct: 452 SPDEEYLGERKDLSTWSGDTEIIEAFYRFSVEIRRIEKEIEKRNADTSRRNRCGAGISPY 511

Query: 287 TLLVPSSEVGLTGRGIPNSVSI 308
            LL+PSS  G+T +GIPNS+++
Sbjct: 512 KLLIPSSGPGVTSKGIPNSITV 533


>GSVIVT01000083001 assembled CDS
          Length = 738

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 119 WKEIREVGHGDKKEEPWWPKMHTREELIESCTIIIWIASALHAAINFGQ 167
           W  I   GHGDKK+EPWWPKM T +ELIE+CTIIIW+ASALHAA+NFGQ
Sbjct: 639 WSAIETWGHGDKKDEPWWPKMRTVKELIETCTIIIWVASALHAAVNFGQ 687



 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 270 NKDVQLKNRVGPVLMTYTLLVPSSEVGLTGRGIPNSVSI 308
           N + + KNRVGPV + YTLL P+SE GLTG+GIPNSVSI
Sbjct: 700 NGNERFKNRVGPVKIPYTLLYPTSEGGLTGKGIPNSVSI 738