Jatropha Genome Database

JcCB0340161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0340161.10 - phase: 0 
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000087001 assembled CDS                                       120   1e-28

>GSVIVT01000087001 assembled CDS
          Length = 1732

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 59/66 (89%)

Query: 1  MANSRPDSKIFSVRIVSIDYYMAPPIPNTDICYSSFQGGKVNEVPVVRVYGSTPAGQKTC 60
          M NS+ D+KIFSVRIVS+DYYMAPPIP+ DICYSSFQGG V EVPV+R+YGSTP GQKTC
Sbjct: 1  MENSQDDAKIFSVRIVSMDYYMAPPIPDLDICYSSFQGGMVKEVPVIRIYGSTPVGQKTC 60

Query: 61 LHIHRV 66
          LH+HR 
Sbjct: 61 LHVHRA 66