Jatropha Genome Database

JcCB0339681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0339681.10 + phase: 0 /partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033273001 assembled CDS                                       146   5e-36

>GSVIVT01033273001 assembled CDS
          Length = 430

 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 89/138 (64%), Gaps = 3/138 (2%)

Query: 46  AFQEEISKYHGLSS-QWDSSFSRMPGSEYFISINYGAADDLALENDYVGSLCFERKIDLT 104
            F   ISKY GL+S +WD  F R+ G EYF +++YG  DD A E++  G  C ERKIDLT
Sbjct: 166 GFSRGISKYRGLASNRWDQPFGRIAGQEYFNNMHYGMGDDAAAESELFGGFCMERKIDLT 225

Query: 105 SYIKWWGSNETRQXXXXXXXXXXXXHGYAEDVG-ELKTSEWAVQPTE-YQMPCLGMPIDG 162
            YIKWWG N+TRQ             G  ED+G ELKT EWA+QPTE YQMP LG+P +G
Sbjct: 226 GYIKWWGPNKTRQSDSLAKSSEETKQGSGEDIGSELKTLEWAIQPTEPYQMPRLGLPHEG 285

Query: 163 KSTKGYAFSALSILSKSA 180
           K  K    SALSILS+SA
Sbjct: 286 KKQKSSTVSALSILSRSA 303