Jatropha Genome Database

JcCB0339221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0339221.10 + phase: 0 
         (172 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013617001 assembled CDS                                        75   2e-14
GSVIVT01032959001 assembled CDS                                        67   3e-12
GSVIVT01019445001 assembled CDS                                        66   7e-12
GSVIVT01024703001 assembled CDS                                        65   2e-11
GSVIVT01032503001 assembled CDS                                        61   2e-10
GSVIVT01020217001 assembled CDS                                        60   4e-10
GSVIVT01032701001 assembled CDS                                        60   5e-10
GSVIVT01014970001 assembled CDS                                        57   3e-09
GSVIVT01020263001 assembled CDS                                        55   1e-08
GSVIVT01011951001 assembled CDS                                        52   1e-07
GSVIVT01010950001 assembled CDS                                        47   5e-06
GSVIVT01010951001 assembled CDS                                        47   5e-06
GSVIVT01010949001 assembled CDS                                        47   6e-06
GSVIVT01010956001 assembled CDS                                        46   7e-06

>GSVIVT01013617001 assembled CDS
          Length = 708

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query: 74  QLYKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           +LY  TL LAYQSFGVVYGDL  SP+YVYKSTFSG LRL+E++ EI G
Sbjct: 15  KLYTTTLCLAYQSFGVVYGDLSISPIYVYKSTFSGRLRLHEDNDEILG 62



 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 91  YGDLCTSPLYVYKSTFSGSLRLYEEDHEIF---GPT-KESKTSLLIKEFFEXXXXXXXXX 146
           Y  LC        STF  S     +D+  F   GP+ KE+++S ++K+FFE         
Sbjct: 98  YSLLCRHAKVGLLSTFHAS-----DDNASFYNSGPSLKETRSSSILKQFFEKHWSSQIVL 152

Query: 147 XXXXXXGTSMVIGDGILTPTMSGTSS 172
                 GT MVIGDG+LTP+MS  S+
Sbjct: 153 LLFVLLGTGMVIGDGVLTPSMSVLSA 178


>GSVIVT01032959001 assembled CDS
          Length = 696

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 78  RTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           R L+LAYQSFGVVYGDL TSPLYVYKSTF G L+ ++ +  IFG
Sbjct: 22  RNLVLAYQSFGVVYGDLSTSPLYVYKSTFIGKLQNHQNEEAIFG 65


>GSVIVT01019445001 assembled CDS
          Length = 799

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 3/58 (5%)

Query: 67  CFLNYMQQL---YKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           CFL    Q+   +KR LLLAYQS G+V+G L TSPLYVYK TFSG L+ Y+ +  +FG
Sbjct: 14  CFLFKQAQIRNQHKRVLLLAYQSLGIVFGSLSTSPLYVYKITFSGWLQHYQTEDAVFG 71


>GSVIVT01024703001 assembled CDS
          Length = 661

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 37/54 (68%), Gaps = 5/54 (9%)

Query: 73  QQLYKRT-----LLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           QQ  KR      L LAYQS GVVYGDL TSPLYVYK+TFSG   L+  D EI+G
Sbjct: 16  QQNVKRVSCTTVLTLAYQSLGVVYGDLSTSPLYVYKTTFSGKSSLHGNDEEIYG 69


>GSVIVT01032503001 assembled CDS
          Length = 735

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 36/49 (73%)

Query: 73  QQLYKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           ++ ++  L LAYQS GVVYGDL TSPLYVYKSTF+  +   E + EI+G
Sbjct: 14  RESWRTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIHHSETNEEIYG 62


>GSVIVT01020217001 assembled CDS
          Length = 725

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 73  QQLYKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           ++ ++  L LAYQS GVVYGDL TSPLYVYKSTF+  ++  E + EI+G
Sbjct: 14  KESWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSETNEEIYG 62


>GSVIVT01032701001 assembled CDS
          Length = 766

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query: 67  CFLNYMQQLYKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           C+    +  +K  LLL+YQS GVVYGDL  SPLYVYKSTF+  +   E + EIFG
Sbjct: 8   CWGTSKKDSWKTLLLLSYQSLGVVYGDLGISPLYVYKSTFAEDIHHSETNEEIFG 62


>GSVIVT01014970001 assembled CDS
          Length = 78

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 35/58 (60%), Gaps = 9/58 (15%)

Query: 64  KISCFLNYMQQLYKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEIFG 121
           K+SC L          L L YQS GVVYGD  T PLYVYK+TFSG   L+  D EI+G
Sbjct: 21  KVSCTL---------VLTLDYQSLGVVYGDFSTFPLYVYKTTFSGKSSLHGNDEEIYG 69


>GSVIVT01020263001 assembled CDS
          Length = 679

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 90  VYGDLCT-SPLYVYKSTFSGSLRLYEEDHEIFGPTKESKTSLLIKEFFEXXXXXXXXXXX 148
           +Y  LC  S + +  ++++    +   D +I  PT+E++TSLL+KEFF+           
Sbjct: 47  LYSLLCRHSKMGLLNASYAARENISSCDSQI--PTEETRTSLLLKEFFQKHRSSRIVLLL 104

Query: 149 XXXXGTSMVIGDGILTPTMSGTSS 172
               GTSMVIGDGILTPTMS  S+
Sbjct: 105 VVLLGTSMVIGDGILTPTMSVLSA 128


>GSVIVT01011951001 assembled CDS
          Length = 748

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 8/44 (18%)

Query: 76  YKRTLLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLRLYEEDHEI 119
           ++RTL LA+QS GVVYGD+ TSPLYV+ STF+        DH+I
Sbjct: 63  WRRTLNLAFQSIGVVYGDIGTSPLYVFSSTFT--------DHKI 98


>GSVIVT01010950001 assembled CDS
          Length = 734

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 80  LLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLR 111
           L LA+QS G+VYGD+ TSPLYVY STF+  ++
Sbjct: 58  LHLAFQSLGIVYGDIGTSPLYVYASTFTDGVK 89


>GSVIVT01010951001 assembled CDS
          Length = 751

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 80  LLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLR 111
           L LA+QS G+VYGD+ TSPLYVY STF+  ++
Sbjct: 58  LHLAFQSIGIVYGDIGTSPLYVYASTFTDGVK 89


>GSVIVT01010949001 assembled CDS
          Length = 728

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 80  LLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLR 111
           L LA+QS G+VYGD+ TSPLYVY STF+  ++
Sbjct: 58  LHLAFQSIGIVYGDIGTSPLYVYASTFTDGVK 89


>GSVIVT01010956001 assembled CDS
          Length = 655

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 80  LLLAYQSFGVVYGDLCTSPLYVYKSTFSGSLR 111
           L LA+QS G+VYGD+ TSPLYVY STF+  ++
Sbjct: 58  LHLAFQSMGIVYGDIGTSPLYVYASTFTDGVK 89