Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (198 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009191001 assembled CDS                                       170   4e-43

>GSVIVT01009191001 assembled CDS
          Length = 316

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 93/163 (57%), Positives = 116/163 (71%), Gaps = 8/163 (4%)

Query: 4   NHLSIKNEHEPAATTWQLKIIAE*VENFREL---SDCKIGKLTLARLLTAHDSLMS---- 56
           + LSIK +HEPAA+ W  K +   +   R+L    DCKIGKLTLARLL AHD+++S    
Sbjct: 26  DRLSIKKDHEPAASKWHAKTLVNEIALVRQLLSEIDCKIGKLTLARLLMAHDAMVSYMAP 85

Query: 57  -CNELVHSEEVLRLYSDSMKLDPSHSQYYKDKRCLVLFYLVFSGRESIVSRCFHYKDLTS 115
             ++ VHSEEVL+LYSD M+LDP HSQYYK+ + LVL   V S RES++  C H++  TS
Sbjct: 86  HSHKKVHSEEVLQLYSDLMELDPMHSQYYKEAQSLVLLQQVTSNRESLLKHCCHHRVSTS 145

Query: 116 PSHAYPMCLRLNKLSLSRIGSVEKLLWVQMPDLSQNELQSIEG 158
            S    +CLRLN LSLSRIG VE+LLWVQM DLS NEL+SI+G
Sbjct: 146 SSVGNSVCLRLNNLSLSRIGCVEQLLWVQMLDLSHNELRSIDG 188