Jatropha Genome Database

JcCB0337681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337681.10 + phase: 0 /partial
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028043001 assembled CDS                                       116   2e-27
GSVIVT01035106001 assembled CDS                                        96   3e-21
GSVIVT01015018001 assembled CDS                                        74   1e-14
GSVIVT01035210001 assembled CDS                                        45   5e-06

>GSVIVT01028043001 assembled CDS
          Length = 811

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 63/77 (81%)

Query: 1  MANPKLGRIPSMRERVEDTLSAHRNELVSLLCRYVDQGKGILQPHTLIDELDSVVGEDGT 60
          M  PKLGR PS+R+RVEDTLSAHRNELV+LL RYV QG GILQPH LIDELD++VG+D  
Sbjct: 1  MVTPKLGRSPSIRDRVEDTLSAHRNELVALLSRYVAQGNGILQPHHLIDELDNIVGDDVG 60

Query: 61 RLGLRDGPFGEALKSAQ 77
          R  L DGPFG+ LKS Q
Sbjct: 61 RQKLSDGPFGQILKSTQ 77


>GSVIVT01035106001 assembled CDS
          Length = 808

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 52/67 (77%)

Query: 11 SMRERVEDTLSAHRNELVSLLCRYVDQGKGILQPHTLIDELDSVVGEDGTRLGLRDGPFG 70
          SMRER ++TLSAHRNELVSL   YV QGKGILQPH +IDELD VVG+D     LRD PF 
Sbjct: 9  SMRERFQETLSAHRNELVSLFTGYVAQGKGILQPHHMIDELDKVVGKDEGMQKLRDSPFS 68

Query: 71 EALKSAQ 77
          + LKSAQ
Sbjct: 69 KVLKSAQ 75


>GSVIVT01015018001 assembled CDS
          Length = 806

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 1  MANPKLGRIPSMRERVEDTLSAHRNELVSLLCRYVDQGKGILQPHTLIDELDSVVGEDGT 60
          MA+  L  + S+R RV++TL+AHRNE++S L R    GKGILQPH L+ E +++   +  
Sbjct: 1  MADGVLTGVHSLRARVDETLTAHRNEILSFLSRIEGHGKGILQPHQLLAEFEAL--PEVN 58

Query: 61 RLGLRDGPFGEALKSAQ 77
          R  L DGPFG+ LKS Q
Sbjct: 59 RKKLSDGPFGDILKSIQ 75


>GSVIVT01035210001 assembled CDS
          Length = 842

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%)

Query: 2  ANPKLGRIPSMRERVEDTLSAHRNELVSLLCRYVDQGKGILQPHTLIDELDSVVGEDGTR 61
          + P L R  SM E + D L   R  +     RY+ +GK +++ + L+DE+++V+ +   R
Sbjct: 3  SKPTLKRADSMAENMPDALRQSRYHMKRCFARYIGKGKRLMKLNHLMDEMEAVIDDKNER 62

Query: 62 LGLRDGPFGEALKSAQ 77
            + +G  G  L S Q
Sbjct: 63 TQVLEGVLGFILCSTQ 78