Jatropha Genome Database

JcCB0337211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337211.10 - phase: 0 
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025217001 assembled CDS                                       235   9e-63
GSVIVT01033673001 assembled CDS                                       199   5e-52
GSVIVT01005048001 assembled CDS                                       194   1e-50
GSVIVT01005049001 assembled CDS                                       174   2e-44
GSVIVT01033852001 assembled CDS                                       137   3e-33

>GSVIVT01025217001 assembled CDS
          Length = 274

 Score =  235 bits (599), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 130/168 (77%)

Query: 1   MQLEWENGAGTIEINGTEYVLRQCHWHSPSEHTIDGGRFALELHMVHESQDGKVAVVGIM 60
           M+L WE  AG+I+INGT+Y L+QCHWHSPSEHT++G RF LELHM+HE+  GK +VVGIM
Sbjct: 101 MKLSWEGDAGSIQINGTKYELKQCHWHSPSEHTVNGKRFDLELHMLHETPSGKTSVVGIM 160

Query: 61  YIIGRPDSFLSSLTEKLRXXXXXXXXXXXXXXXNPKDIKIGSRKYYRYIGSLTVPPCTEN 120
           Y IGR DSFLS+LT+ L                +P+ IKIGSRKYYRY+GSLT PPCTE+
Sbjct: 161 YKIGRADSFLSTLTDHLEALSDSSDQERDVGVVDPRHIKIGSRKYYRYMGSLTTPPCTED 220

Query: 121 VVWTISRKVRTVTKEQVELLRVAVHDEADTNARPLQPTNGRSVQLYRP 168
           V+WTI  KVRTVT+EQV LLRVAVHD++ +NARP+QP N RSV  YRP
Sbjct: 221 VIWTIVNKVRTVTREQVNLLRVAVHDDSGSNARPIQPINRRSVHFYRP 268


>GSVIVT01033673001 assembled CDS
          Length = 270

 Score =  199 bits (506), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 121/169 (71%), Gaps = 1/169 (0%)

Query: 1   MQLEWENGAGTIEINGTEYVLRQCHWHSPSEHTIDGGRFALELHMVHESQDGKVAVVGIM 60
           + L+W   AG+I INGTEY L+Q HWH+PSEH+I+G R+ LELHMVH S D  +AVVG++
Sbjct: 103 ISLQWVGDAGSIRINGTEYKLQQGHWHAPSEHSINGRRYDLELHMVHVSPDNNIAVVGLI 162

Query: 61  YIIGRPDSFLSSLTEKLRXXXXXXXXXXXXXXXNPKDIKIGSRKYYRYIGSLTVPPCTEN 120
           Y  G+PD FLS +   +                +P DIK+G RKYY+Y+GSLTVPPCTE 
Sbjct: 163 YKTGQPDKFLSKMMSNI-TSMADKMEQRKMGVIHPGDIKMGGRKYYKYMGSLTVPPCTEG 221

Query: 121 VVWTISRKVRTVTKEQVELLRVAVHDEADTNARPLQPTNGRSVQLYRPE 169
           V W I++K+RTV++EQV+ LR+AVHD A+ NARP+QP N R VQLY P+
Sbjct: 222 VTWIINKKIRTVSREQVKQLRLAVHDYAEMNARPVQPLNLREVQLYGPK 270


>GSVIVT01005048001 assembled CDS
          Length = 276

 Score =  194 bits (494), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 115/168 (68%), Gaps = 2/168 (1%)

Query: 1   MQLEWENGAGTIEINGTEYVLRQCHWHSPSEHTIDGGRFALELHMVHESQDGKVAVVGIM 60
           + +EW+  AG I INGT + L+QCHWHSPSEHT +G R+ LELH++H S D K+AV+GI 
Sbjct: 104 VTVEWKGYAGKININGTYFKLQQCHWHSPSEHTFNGSRYNLELHVIHLSSDEKIAVIGIT 163

Query: 61  YIIGRPDSFLSSLTEKLRXXXXXXXXXXXXXXXNPKDIKIGSRKYYRYIGSLTVPPCTEN 120
           Y  GR D FL+ +   +                NP DIK GSRKYYRYIGSLTVPPCTE 
Sbjct: 164 YKYGRADPFLTRMLRHI--DSLPVGEEKELGIVNPGDIKFGSRKYYRYIGSLTVPPCTEG 221

Query: 121 VVWTISRKVRTVTKEQVELLRVAVHDEADTNARPLQPTNGRSVQLYRP 168
           V+WTIS+KVRT T+EQV  LR AV D  + NARP Q  +GR+V LY+P
Sbjct: 222 VIWTISKKVRTATREQVRALRKAVQDGYEANARPSQEVDGRTVLLYKP 269


>GSVIVT01005049001 assembled CDS
          Length = 271

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MQLEWENGAGTIEINGTEYVLRQCHWHSPSEHTIDGGRFALELHMVHESQDGKVAVVGIM 60
           + +EW+  AG I+++G  + L Q HWH+PSEHT++G  F +ELH+VH+S  GK+AV+G  
Sbjct: 98  VAVEWKGNAGKIKLHGVHFKLEQLHWHTPSEHTVNGTSFQMELHLVHKSARGKIAVIGKT 157

Query: 61  YIIGRPDSFLSSLTEKLRXXXXXXXXXXXXXXXNPKDIKIGSRKYYRYIGSLTVPPCTEN 120
           + +G PD FL+ + + +                N  DIK   RKYYRYIGSLT PPCTE 
Sbjct: 158 FKLGPPDPFLAKMIDHVTGIPAGEEKDIGIVDAN--DIKHWGRKYYRYIGSLTTPPCTEG 215

Query: 121 VVWTISRKVRTVTKEQVELLRVAVHDEADTNARPLQPTNGRSVQLYRP 168
           V+WTIS+KV TV+KEQVE LR  VHD  + NARP Q  NGR V LY P
Sbjct: 216 VIWTISKKVNTVSKEQVESLRRVVHDGHEGNARPAQRLNGRPVWLYIP 263


>GSVIVT01033852001 assembled CDS
          Length = 279

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 101/169 (59%), Gaps = 5/169 (2%)

Query: 3   LEWENGAGTIEINGTEYVLRQCHWHSPSEHTIDGGRFALELHMVHESQDGKVAVVGIMYI 62
           + ++   G + ++G  Y L+Q HWHSPSEH IDG ++  ELH+VH + DG +AVVGI+Y 
Sbjct: 102 VRFDEDVGVLLVDGKNYSLKQMHWHSPSEHRIDGLQYPAELHLVHRTDDGNIAVVGILYQ 161

Query: 63  IGRPDSFLSSLTEKLRXXXXXXXXXXXXX-----XXNPKDIKIGSRKYYRYIGSLTVPPC 117
            G  D  LS L  KL                     + K I+  +R+YYRY+GSLT PPC
Sbjct: 162 YGDADPLLSKLKNKLDELAKDVCASNEQSQVSLGTMDTKLIRRNTRRYYRYMGSLTTPPC 221

Query: 118 TENVVWTISRKVRTVTKEQVELLRVAVHDEADTNARPLQPTNGRSVQLY 166
           +E V W I  K+R ++K+QV  L+  ++ +   N+RPLQP NGR +QLY
Sbjct: 222 SEKVAWHILGKIRDISKDQVAALKAPLNSDCKDNSRPLQPLNGRRIQLY 270