Jatropha Genome Database

JcCB0337131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0337131.10 - phase: 0 /partial
         (255 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007185001 assembled CDS                                       292   1e-79

>GSVIVT01007185001 assembled CDS
          Length = 255

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/225 (63%), Positives = 185/225 (82%), Gaps = 3/225 (1%)

Query: 1   GVQVDRMETELSVEKARGSPSSKQDSESEEFCKLLQQQKYLNNVTETALRKNQPLIILNL 60
           GVQVD+MET+ +VE+AR SP  + + ESEEFC LL+QQK+L+N+TE ALRKNQPLIILNL
Sbjct: 3   GVQVDKMETDPTVEEARSSPGCRTEFESEEFCVLLRQQKHLHNLTERALRKNQPLIILNL 62

Query: 61  MHEKVPLFVAEDLTGTSKLEWTCLEALRVRKFPGGPSMEIS-TVDIQAEAREACVSNGKT 119
           MHEK+PL +AEDL+GT KLE  CL+AL +  FPGGP +EIS T D+Q E +EAC+SN ++
Sbjct: 63  MHEKIPLLMAEDLSGTPKLEQMCLQALSMCAFPGGPLIEISVTNDLQDEDKEACLSNSRS 122

Query: 120 NSTHVSPAAAIPELDMPIVVSTIQSCSQSINKVVDSLQQKFPTVSKSQLRNKVREISDFV 179
           ++T VS   AI + D+P +V+TIQ+C+Q INK+V+SLQ KFP + KSQLRNKVREISDFV
Sbjct: 123 STTPVSTGMAIVDSDLPKIVATIQACTQGINKLVESLQLKFPAIPKSQLRNKVREISDFV 182

Query: 180 DNRWQVKKEVLNEVGISISPPGKSRGRMPNISTFFSKRCLPPTGK 224
           DNRWQVKK+VL+++G+SISP  +  GR  +I+ FFSKRCLPP+ +
Sbjct: 183 DNRWQVKKDVLHKLGLSISP--EKGGRTKSIAAFFSKRCLPPSNR 225