Jatropha Genome Database

JcCB0336621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0336621.10 - phase: 0 /partial
         (140 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037287001 assembled CDS                                       263   2e-71
GSVIVT01009151001 assembled CDS                                       209   5e-55
GSVIVT01003597001 assembled CDS                                       206   2e-54

>GSVIVT01037287001 assembled CDS
          Length = 886

 Score =  263 bits (671), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/138 (92%), Positives = 133/138 (96%)

Query: 3   SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 62
           +ALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE+SEDLY W
Sbjct: 57  NALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAESSEDLYGW 116

Query: 63  KTALEHALAQAPSAALVMGHNGIFRSDTNEAIEGSFHQWRDKRPVKSLVVGRPILLALED 122
           KTALE ALAQAPSAALVMGHNGIFR+DT++ +EGSF QWRDKR VKSLVVGRPILLALED
Sbjct: 117 KTALEQALAQAPSAALVMGHNGIFRNDTSDTMEGSFCQWRDKRTVKSLVVGRPILLALED 176

Query: 123 IDGGPSFLEKALRFLEKF 140
           IDGGPSFLEKALRFLEKF
Sbjct: 177 IDGGPSFLEKALRFLEKF 194


>GSVIVT01009151001 assembled CDS
          Length = 900

 Score =  209 bits (531), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 117/138 (84%), Gaps = 5/138 (3%)

Query: 3   SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 62
           SA+PQ+G EVNLTLGGIDLNNSGSV V+ DKKLLTVLFPDGRDGRAFTLKAET EDLYEW
Sbjct: 26  SAIPQKGSEVNLTLGGIDLNNSGSVDVKADKKLLTVLFPDGRDGRAFTLKAETLEDLYEW 85

Query: 63  KTALEHALAQAPSAALVMGHNGIFRSDTNEAIEGSFHQWRDKRPVKSLVVGRPILLALED 122
           K ALE+AL+QAPSAALVMG NG+ ++D  EA++      +DK P KS V+GRPILLALED
Sbjct: 86  KAALENALSQAPSAALVMGQNGVLKNDQAEAVD-----VKDKLPAKSSVLGRPILLALED 140

Query: 123 IDGGPSFLEKALRFLEKF 140
            DG PSFLEKALRF+E+ 
Sbjct: 141 ADGTPSFLEKALRFIEEH 158


>GSVIVT01003597001 assembled CDS
          Length = 489

 Score =  206 bits (525), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 117/138 (84%), Gaps = 5/138 (3%)

Query: 3   SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 62
           S +PQ+GGEVNLTLGGIDLNNSGSVV++ DKKLLTVLFPDG DGRAFTLKAET EDL EW
Sbjct: 72  SIVPQKGGEVNLTLGGIDLNNSGSVVMKADKKLLTVLFPDGGDGRAFTLKAETLEDLNEW 131

Query: 63  KTALEHALAQAPSAALVMGHNGIFRSDTNEAIEGSFHQWRDKRPVKSLVVGRPILLALED 122
           K ALE ALAQAP+ ALVMGHN IFR++  + I+      R K PVKSLVVGRPILLALED
Sbjct: 132 KDALEDALAQAPNVALVMGHNSIFRNEPTDGIDV-----RSKHPVKSLVVGRPILLALED 186

Query: 123 IDGGPSFLEKALRFLEKF 140
           ++G PSFLEKALRFLE++
Sbjct: 187 VNGAPSFLEKALRFLEQY 204