Jatropha Genome Database

JcCB0336411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0336411.10 - phase: 1 /partial
         (268 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034037001 assembled CDS                                       493   e-140
GSVIVT01034034001 assembled CDS                                       390   e-109
GSVIVT01034516001 assembled CDS                                       268   3e-72
GSVIVT01012513001 assembled CDS                                       227   4e-60
GSVIVT01016373001 assembled CDS                                        81   4e-16

>GSVIVT01034037001 assembled CDS
          Length = 355

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/265 (89%), Positives = 247/265 (93%)

Query: 4   SNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSP 63
           SNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSP
Sbjct: 91  SNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSP 150

Query: 64  NDECLADVGDDNTLDSTEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVITIGTGVYAFTLD 123
           NDECLAD+GDD+TLDSTEQRC+VNVCQPGSNLLAAGYCMYSSS+IFV++IGTGV+AFTLD
Sbjct: 151 NDECLADIGDDSTLDSTEQRCVVNVCQPGSNLLAAGYCMYSSSIIFVVSIGTGVFAFTLD 210

Query: 124 PMYGEFVLTQEKIQIPKAGKIYAFNEGNYQXXXXXXXXXXXXXXXPGPSGKPYSARYIGS 183
           PMYGEFVLTQE IQIPK+GKIY+FNEGNYQ               PGPSGKPYSARYIGS
Sbjct: 211 PMYGEFVLTQENIQIPKSGKIYSFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGS 270

Query: 184 LVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIQP 243
           LVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMS++VEQAGGKGSDGHQRILDIQP
Sbjct: 271 LVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSYLVEQAGGKGSDGHQRILDIQP 330

Query: 244 TEIHQRVPLYIGSQEEVEKLEKYLA 268
            EIHQRVPLYIGS EEVEKLEKYLA
Sbjct: 331 VEIHQRVPLYIGSVEEVEKLEKYLA 355


>GSVIVT01034034001 assembled CDS
          Length = 374

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/264 (69%), Positives = 220/264 (83%), Gaps = 3/264 (1%)

Query: 5   NCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPN 64
           NCLRSSGRTGIIASEEEDVPVAVEE+YSGNYIVVFDP+DGS+NID +++T SIFGIY P+
Sbjct: 114 NCLRSSGRTGIIASEEEDVPVAVEETYSGNYIVVFDPIDGSANIDTSLTTESIFGIYGPD 173

Query: 65  DECLADVGDDNTLDSTEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVITIGTGVYAFTLDP 124
           ++CL D+ DD+ LD T+Q+C+V+VCQPGSNLLAAGYC+YSSSV+F ++IG GV+AFTLDP
Sbjct: 174 EQCLFDIDDDSMLDQTKQKCVVSVCQPGSNLLAAGYCLYSSSVVFTLSIGKGVFAFTLDP 233

Query: 125 MYGEFVLTQEKIQIPKAGKIYAFNEGNYQXXXXXXXXXXXXXXXPGPSGKPYSARYIGSL 184
            +GEFVLT   I+IP++GKIY+FNEGN++               PGP+GKPYS RYIG L
Sbjct: 234 TFGEFVLTHADIKIPRSGKIYSFNEGNHELWDDNLKRYLHHLRQPGPNGKPYSGRYIGCL 293

Query: 185 VGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIQPT 244
           VG+ HR LLYGGIYG P++  SK G LRLLYECAPMS++VEQAGGK +DG+QRILDIQPT
Sbjct: 294 VGEIHRMLLYGGIYGNPKNMNSKKGNLRLLYECAPMSYLVEQAGGKATDGNQRILDIQPT 353

Query: 245 EIHQRVPLYIGSQEEVEKLEKYLA 268
           E   R P++IGS  EVEKLEKYLA
Sbjct: 354 E---RTPIFIGSPVEVEKLEKYLA 374


>GSVIVT01034516001 assembled CDS
          Length = 339

 Score =  268 bits (684), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/262 (53%), Positives = 169/262 (64%), Gaps = 14/262 (5%)

Query: 7   LRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDE 66
           L SSGRT I+ SEE++    VE S  G Y VVFDPLDGSSNID  VS G+IFGIY   D 
Sbjct: 88  LVSSGRTCILVSEEDEEATIVEPSKRGRYCVVFDPLDGSSNIDCGVSIGTIFGIYMVKD- 146

Query: 67  CLADVGDDNTLDSTEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVITIGTGVYAFTLDPMY 126
                G + TLD        NV QPG N+LAAGYCMY SS   V++ GTGV  FTLDP  
Sbjct: 147 -----GGEPTLD--------NVLQPGKNMLAAGYCMYGSSCTLVLSTGTGVNGFTLDPSL 193

Query: 127 GEFVLTQEKIQIPKAGKIYAFNEGNYQXXXXXXXXXXXXXXXPGPSGKPYSARYIGSLVG 186
           GEF+LT   I+IPK GKIY+ NEGN +               P     P S RYIGS+V 
Sbjct: 194 GEFILTHPNIKIPKKGKIYSVNEGNTKNWDAPTAKYVEKCKFPKDGSSPKSLRYIGSMVA 253

Query: 187 DFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIQPTEI 246
           D HRTLLYGGI+ YP DKKS NGKLR+LYE  PMSF++EQAGG+   G QR LD+ P  I
Sbjct: 254 DVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKQRALDLVPKNI 313

Query: 247 HQRVPLYIGSQEEVEKLEKYLA 268
           H+R P+++GS ++VE+++   A
Sbjct: 314 HERSPIFLGSYDDVEEIKALYA 335


>GSVIVT01012513001 assembled CDS
          Length = 362

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 168/267 (62%), Gaps = 21/267 (7%)

Query: 3   VSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYS 62
           + + LR+SG+  ++ASEE+D PV + +   G ++VV DPLDGS NIDA++ TG+IFGIY+
Sbjct: 101 ILSSLRNSGKVAVMASEEDDFPVWISDD--GPFVVVTDPLDGSRNIDASIPTGTIFGIYN 158

Query: 63  PNDECLADVGDDNTLDS--TEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVITIGTGVYAF 120
              E          LD    E++ ++N  Q G  L+AA Y +YSS+ I   + G+G +AF
Sbjct: 159 RLVE----------LDHLPKEEKTMLNSLQSGLKLVAAVYVLYSSATILCTSFGSGTHAF 208

Query: 121 TLDPMYGEFVLTQEKIQIPKAGKIYAFNEGNY-QXXXXXXXXXXXXXXXPGPSGKPYSAR 179
           TLD   G+F+LT   I+IP  G+IY+ N+  Y                  G   K YSAR
Sbjct: 209 TLDHSTGDFILTHPNIKIPPRGQIYSVNDARYFDWPQGLRQYIDTVRQGKGKYPKKYSAR 268

Query: 180 YIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRIL 239
           YI SLV DFHRTL+YGG+   PR        LRL+YE  P+SF+VEQAGG+GSDG  RIL
Sbjct: 269 YICSLVADFHRTLMYGGVAMNPR------SHLRLVYEANPLSFLVEQAGGRGSDGKIRIL 322

Query: 240 DIQPTEIHQRVPLYIGSQEEVEKLEKY 266
            IQP ++HQR+PL++GS E++E+LE Y
Sbjct: 323 SIQPVKLHQRLPLFLGSPEDIEELESY 349


>GSVIVT01016373001 assembled CDS
          Length = 393

 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 107/241 (44%), Gaps = 38/241 (15%)

Query: 33  GNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADVGDDNTLDSTEQRCIVNVCQPG 92
           G + V FDPLDGSS +D   + G+IFG++ P D+     G D                  
Sbjct: 169 GGFSVAFDPLDGSSIVDTNFTVGTIFGVW-PGDKLTGVTGRDQ----------------- 210

Query: 93  SNLLAAGYCMYSSSVIFVITIGTGVYAFTLDPMYGEFVLTQE-KIQIPK----AGKIYAF 147
              +AA   +Y     +V+       A    P   EF+L  E K Q  K     G+   F
Sbjct: 211 ---VAAAMGIYGPRTTYVL-------ALKDIPGTHEFLLLDEGKWQHVKDTTEIGEGKLF 260

Query: 148 NEGNYQXXXXXXXXXXXXXXXPGPSGKPYSARYIGSLVGDFHRTLLY-GGIYGYPRDKKS 206
           + GN +                    + Y+ RY G +V D ++ ++   GI+       S
Sbjct: 261 SPGNLRATFDNPDYDKLINYY---VREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPSS 317

Query: 207 KNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIQPTEIHQRVPLYIGSQEEVEKLEKY 266
           K  KLRLL+E AP+ F++E+AGG  SDG Q +LD     + +R  +  GS+ E+ + E+ 
Sbjct: 318 K-AKLRLLFEVAPLGFLIEKAGGFSSDGTQSVLDKVINNLDERTQVAYGSKNEIIRFEET 376

Query: 267 L 267
           L
Sbjct: 377 L 377