Jatropha Genome Database

JcCB0336251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0336251.10 - phase: 2 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023826001 assembled CDS                                       223   3e-59

>GSVIVT01023826001 assembled CDS
          Length = 286

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 121/129 (93%)

Query: 1   WVGIIGKRTTLNGEELSTRTCAKLSQAYLYTTSPHLFSGDAEEAFARLRSKVKMPLYGCD 60
           W+G+ G++TTLNG+E++TR CAKL+QAYLYTTSPHLFSGDAE+AFAR+R+KVK+PLYGCD
Sbjct: 146 WIGMSGRKTTLNGQEVATRDCAKLAQAYLYTTSPHLFSGDAEDAFARVRNKVKVPLYGCD 205

Query: 61  CYAFALLASGYVDLAIESGVKPYDFLSLIPVIEGAGGIITDWKGGSLFWDASPNSRATSF 120
           CYA+ALLASGYVDL IESG+KPYDFLSL+PVIEGAGG+ITDWKG  L+W+AS +S A SF
Sbjct: 206 CYAYALLASGYVDLVIESGLKPYDFLSLVPVIEGAGGVITDWKGQQLYWEASSDSHAPSF 265

Query: 121 NILAAGDKQ 129
           N++AAGD++
Sbjct: 266 NVVAAGDEE 274