Jatropha Genome Database

JcCB0335551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0335551.10 - phase: 1 /partial
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036557001 assembled CDS                                       254   2e-68
GSVIVT01008552001 assembled CDS                                       248   2e-66
GSVIVT01008133001 assembled CDS                                       247   2e-66
GSVIVT01012244001 assembled CDS                                       245   1e-65
GSVIVT01019151001 assembled CDS                                        91   6e-19

>GSVIVT01036557001 assembled CDS
          Length = 267

 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 155/219 (70%), Gaps = 3/219 (1%)

Query: 1   NLTAPATPYFFNTLYDPYREGADFVRGYPFSLRNGVACALSCGLWLNLADFDAPTQALKP 60
           NL +P+TP+FFNTLYDP+REGAD+VRGYPFSLR GV  A+S GLWLN+ D+DAPTQ +KP
Sbjct: 35  NLLSPSTPFFFNTLYDPFREGADYVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 94

Query: 61  GQRNSRYVDAVMTVPARAMMPISGINIAFDREXXXXXXXXXXXXXXXXXXRWETMEDIWS 120
            +RN+R+VDAV+T+P   + P+ G+N+AFDR+                  R+   +D+W+
Sbjct: 95  LERNTRFVDAVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRY---DDMWA 151

Query: 121 GMCVKVVCDHLGLGVKSGLPYVWRKDRGNAIDSLKKEWEGMKLMEEVVPFFQSVRLPRTA 180
           G CVKV CDHLGLGVK+GLPY+W     N   +LKKE+ G+   EE++PFFQSV LP+  
Sbjct: 152 GWCVKVTCDHLGLGVKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQSVSLPKDC 211

Query: 181 ATAEDCVIEIATAVKQQLGPLDPVFTRAGEAMFEWIKIW 219
            T + C +E+A  VK++LG +DP F + G+AM  WI+ W
Sbjct: 212 TTVQKCYVELAKLVKEKLGKVDPYFVKLGDAMVTWIEAW 250


>GSVIVT01008552001 assembled CDS
          Length = 340

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 152/226 (67%), Gaps = 3/226 (1%)

Query: 1   NLTAPATPYFFNTLYDPYREGADFVRGYPFSLRNGVACALSCGLWLNLADFDAPTQALKP 60
           NL  P+TP+FFNTLYDP+REGADFVRGYPFSLR G   A+S GLWLN+ D+DAPTQ +KP
Sbjct: 97  NLLTPSTPFFFNTLYDPFREGADFVRGYPFSLREGAPTAISHGLWLNIPDYDAPTQLVKP 156

Query: 61  GQRNSRYVDAVMTVPARAMMPISGINIAFDREXXXXXXXXXXXXXXXXXXRWETMEDIWS 120
            +RN+RYVDAVMT+P   + P+ G+N+ FDRE                  R+   +D+W+
Sbjct: 157 LERNTRYVDAVMTIPKGTLFPMCGMNLGFDRELIGPAMYFGLMGDGQPIGRY---DDMWA 213

Query: 121 GMCVKVVCDHLGLGVKSGLPYVWRKDRGNAIDSLKKEWEGMKLMEEVVPFFQSVRLPRTA 180
           G C KV+CDH+ LGVK+GLPY+W     N   +LKKE++G+   E+++PFFQSV  P+  
Sbjct: 214 GWCAKVICDHMSLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVFPKEC 273

Query: 181 ATAEDCVIEIATAVKQQLGPLDPVFTRAGEAMFEWIKIWKAHGSPV 226
            T + C IE++  VK++LG +DP F +  ++M  WI+ W+    P 
Sbjct: 274 ITVQQCYIELSKQVKEKLGHVDPYFQKLADSMVTWIEAWEELNPPT 319


>GSVIVT01008133001 assembled CDS
          Length = 301

 Score =  247 bits (631), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 152/219 (69%), Gaps = 3/219 (1%)

Query: 1   NLTAPATPYFFNTLYDPYREGADFVRGYPFSLRNGVACALSCGLWLNLADFDAPTQALKP 60
           NL AP+TP+FFNTLYDPYR+GADFVRGYPFSLR GV  A+S GLWLN+ D+DAPTQ +KP
Sbjct: 68  NLLAPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 127

Query: 61  GQRNSRYVDAVMTVPARAMMPISGINIAFDREXXXXXXXXXXXXXXXXXXRWETMEDIWS 120
            +RN+RYVDAVMT+P   + P+ G+N+ F+RE                  R+   +D+W+
Sbjct: 128 RERNTRYVDAVMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMGDGQPIGRY---DDMWA 184

Query: 121 GMCVKVVCDHLGLGVKSGLPYVWRKDRGNAIDSLKKEWEGMKLMEEVVPFFQSVRLPRTA 180
           G C K++CDH+GLG+K+GLPY+W     N   +LKKE++G+   EE++PFFQSV LP+  
Sbjct: 185 GWCTKIICDHMGLGIKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVILPKEC 244

Query: 181 ATAEDCVIEIATAVKQQLGPLDPVFTRAGEAMFEWIKIW 219
            T + C IE++  V+ +LG +D  F +  +AM  WI+ W
Sbjct: 245 TTVQKCYIELSKQVRAKLGKVDEYFIKLADAMVTWIEAW 283


>GSVIVT01012244001 assembled CDS
          Length = 269

 Score =  245 bits (625), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 150/219 (68%), Gaps = 3/219 (1%)

Query: 1   NLTAPATPYFFNTLYDPYREGADFVRGYPFSLRNGVACALSCGLWLNLADFDAPTQALKP 60
           NL  P+TP+FFNTLYDPYR+GADFVRGYPFSLR GV  A+S GLWLN+ D+DAPTQ +KP
Sbjct: 35  NLLTPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 94

Query: 61  GQRNSRYVDAVMTVPARAMMPISGINIAFDREXXXXXXXXXXXXXXXXXXRWETMEDIWS 120
            +RN+RYVDAV+TVP   + P+ G+N+AF+RE                  R+   +D+W+
Sbjct: 95  RERNTRYVDAVLTVPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRY---DDMWA 151

Query: 121 GMCVKVVCDHLGLGVKSGLPYVWRKDRGNAIDSLKKEWEGMKLMEEVVPFFQSVRLPRTA 180
           G C+KV+CDHLG GVK+GLPY+W     N   +LKKE+ G+   EE++PFFQ+  LP+  
Sbjct: 152 GWCMKVICDHLGWGVKTGLPYIWHSKASNPFVNLKKEYSGIYWQEELIPFFQAATLPKEC 211

Query: 181 ATAEDCVIEIATAVKQQLGPLDPVFTRAGEAMFEWIKIW 219
            T + C +E++  VK +L  +DP F +  +AM  WI+ W
Sbjct: 212 TTVQQCYLELSKQVKAKLEKVDPYFVKLADAMITWIEAW 250


>GSVIVT01019151001 assembled CDS
          Length = 159

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 10/87 (11%)

Query: 135 VKSGLPYVWRKDRGNAIDSLKKEWEGMKLMEEVVPFFQSVRLPRTAATAEDCVIEIATAV 194
           V S +  V + + GN++          KLMEEVVPFFQSVRL + A T EDC++EI   V
Sbjct: 70  VGSNMCSVMKAEVGNSV----------KLMEEVVPFFQSVRLSQAAVTTEDCMLEIVALV 119

Query: 195 KQQLGPLDPVFTRAGEAMFEWIKIWKA 221
           K++L  LDPVF RA +AM +WIK+WKA
Sbjct: 120 KERLATLDPVFARAAQAMADWIKLWKA 146