Jatropha Genome Database

JcCB0335101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0335101.10 - phase: 0 /pseudo/partial
         (349 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009184001 assembled CDS                                        91   5e-19

>GSVIVT01009184001 assembled CDS
          Length = 641

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 163/388 (42%), Gaps = 61/388 (15%)

Query: 10  LKQRWAIIRKRQGTSNLGG-NTSSVQLIEEQRAARHAMNMALDPPVKNTFTNSS------ 62
           L QRW IIRK+    N+GG N++  QL E Q AARHAM++ALD PVKN  T+SS      
Sbjct: 236 LSQRWTIIRKKHKNLNVGGANSNGSQLSEAQLAARHAMSLALDMPVKNLTTSSSIAGTNP 295

Query: 63  --------------------GETSSAQHRFQYPFATKSSVMGTL--VPGAKPQVKMSNLV 100
                                  S AQ   Q    +  S MG+L   P ++   K ++  
Sbjct: 296 NATSSNSAFPATPAEALPASTNISQAQQLSQQGPVSTLSQMGSLGSAPKSRATSKKTSAK 355

Query: 101 KPDIGSDLXXXXXXXXXXXXXTQSDXXXXXXXXXXXXXVHIMSSSGSSIKPALPAGSSGN 160
                  +             T S              VHIM    + IK ++  G++  
Sbjct: 356 STFSSQSMLKATAVAAGARIATPSAAASLLKDAQSRNAVHIMPGGSTLIKSSVAGGANPL 415

Query: 161 PE----AYPNVR-------AASLSTQAAASPSGAHPALGKACLPTTQQAPSTSGAALNLL 209
           P     A+PNV          SLST +A +PS +     K   P  Q APS S  ++N+ 
Sbjct: 416 PANHLGAHPNVHYKCAGPPTTSLSTYSAVAPSVSRTGSAKPAAPGGQLAPSPSATSVNIS 475

Query: 210 SEQAN-------TELPPKQDSDNAKHVET-LSKDV-AIEHGEEKSAVSQNQDAEVKTEVD 260
           SEQ N        E P KQ++  ++  +  +S +V   +  E+++ VS N  +E   E  
Sbjct: 476 SEQTNAATTSLAVEYPAKQETKTSEETKVPISGNVPKAKVLEDQACVSSNTASEQVQEDQ 535

Query: 261 VEQSNASPNLE-----VAESD---KMDVLENQAE--PHQNSKSDSIKGLSIVKD-ENRSA 309
              SN    LE     V+++    K +  EN  E    QN   + I    +  + EN+S 
Sbjct: 536 ATLSNTEVVLENKKAMVSDTKCLLKTETAENDGEVAESQNVNDNKIMDFRVAGECENQSV 595

Query: 310 IRENGNSQIISAKLADLPSMETDECSEK 337
             EN  +Q  + K  DLP+  TD C EK
Sbjct: 596 ANENSGNQNANEKQTDLPNTATD-CGEK 622