Jatropha Genome Database

JcCB0334901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.20 - phase: 1 /partial
         (73 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016720001 assembled CDS                                        99   4e-22
GSVIVT01026404001 assembled CDS                                        75   8e-15

>GSVIVT01016720001 assembled CDS
          Length = 407

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 53/68 (77%), Gaps = 2/68 (2%)

Query: 6   GLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQXXXXXXXXXXSQAIYDGGFQSVAA 65
           GLSATDLL YERQLAM KMG  HALMHPQGQH LKQ          SQAIYDGGFQ+VAA
Sbjct: 342 GLSATDLLAYERQLAMSKMG--HALMHPQGQHPLKQAAMGMGAAGASQAIYDGGFQNVAA 399

Query: 66  AQQLMYYQ 73
           AQQLMYYQ
Sbjct: 400 AQQLMYYQ 407


>GSVIVT01026404001 assembled CDS
          Length = 146

 Score = 74.7 bits (182), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 35/41 (85%)

Query: 1   AAPLPGLSATDLLTYERQLAMGKMGGVHALMHPQGQHALKQ 41
           AAPLP LSATDL  YERQLAM KMGGVHALMHPQGQH  KQ
Sbjct: 98  AAPLPSLSATDLRAYERQLAMSKMGGVHALMHPQGQHPFKQ 138