Jatropha Genome Database

JcCB0334901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0334901.10 + phase: 0 /pseudo/partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016719001 assembled CDS                                       225   9e-60

>GSVIVT01016719001 assembled CDS
          Length = 332

 Score =  225 bits (574), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 127/142 (89%), Gaps = 2/142 (1%)

Query: 70  SSAPLLE--PVGSRIQDNEVIVDPRKQQLIARLKTGKNFLRNQDPEKALAEFKAALDLAQ 127
           S AP L   PVGS+I +NEVI+DP+K++LI+ LK GKNFLRNQ+PEKA  EFK AL+LA+
Sbjct: 191 SYAPSLSYAPVGSKIPENEVIIDPKKEELISCLKAGKNFLRNQNPEKAFMEFKTALELAR 250

Query: 128 SMKDPIEEKKAARGLGASLQRQGKYQEAIKYHSMVLAISQRVGEDSGNTEAYGAIADCYT 187
           ++KDP EEKKAARGLGASLQRQGKY++AIKYHS VL IS+R GE+SGNTEAYGAIADCYT
Sbjct: 251 TLKDPTEEKKAARGLGASLQRQGKYRDAIKYHSTVLEISKREGENSGNTEAYGAIADCYT 310

Query: 188 EIGDLERAGKFYDQYIARLEKD 209
           E+GDLERAGKFYDQYIARLEKD
Sbjct: 311 ELGDLERAGKFYDQYIARLEKD 332