Jatropha Genome Database

JcCB0333431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0333431.10 - phase: 0 /pseudo/partial
         (352 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035095001 assembled CDS                                       481   e-136

>GSVIVT01035095001 assembled CDS
          Length = 1121

 Score =  481 bits (1237), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/323 (71%), Positives = 269/323 (83%), Gaps = 3/323 (0%)

Query: 5   QVKEWLHSLGIVDHHVAAVQDEDEPDDGGFPLNQEESVRNRNVPSVAALPIFRPALGGQQ 64
           QVKEWL ++GI +H  A V D+DEPD+   PL+ +ESV+NR++PS AALPI RPALG Q 
Sbjct: 127 QVKEWLQNIGIGEH-TAVVHDDDEPDEETVPLHHDESVKNRDIPSSAALPIIRPALGRQN 185

Query: 65  AI-DKAKVAMQNYLNHFLGNMDIVNSREVCKFLEVSKLSFSREYGPKLKEGYVMAKHLSN 123
           ++ D+AKVAMQ YLN FLGN+DIVNSREVCKFLEVSKLSFS EYGPKLKE YVM KHL  
Sbjct: 186 SVSDRAKVAMQGYLNLFLGNLDIVNSREVCKFLEVSKLSFSPEYGPKLKEDYVMVKHLPK 245

Query: 124 ISDNGDIR-CCPCSLFDCCSDNWEKVWAVLKPGFLALLEDHFDTKLLDIIVFDILPTSTG 182
           I    D R CCPC  F CC+DNW+KVWAVLKPGFLALLED F  + LDIIVFD+LP S G
Sbjct: 246 IPKEDDTRKCCPCPWFSCCNDNWQKVWAVLKPGFLALLEDPFHPQPLDIIVFDLLPASDG 305

Query: 183 SKGSQVYIANQIKERNPLRYSFKVSSGSKSIKLRTTSSGKVKEWVAAINDAGLRPLEGWC 242
           +   ++ +A +IKERNPLR++ KV+ G++SI+LR  SS KVK+WVAAINDAGLRP EGWC
Sbjct: 306 NGEGRLSLAKEIKERNPLRHALKVTCGNRSIRLRAKSSAKVKDWVAAINDAGLRPPEGWC 365

Query: 243 HPHRFGSFSPLRGLTDDGSQAQWFVDGQAAFEAIASAIENAKSEIFITGWWLCPELYLRR 302
           HPHRFGSF+P RGL++DGS AQWFVDG+AAFEAIASAIE AKSEIFI GWW+CPELYLRR
Sbjct: 366 HPHRFGSFAPPRGLSEDGSLAQWFVDGRAAFEAIASAIEEAKSEIFICGWWVCPELYLRR 425

Query: 303 PFRSHSISRLDSLLEAKAKQGVQ 325
           PF SH+ SRLD+LLEAKAKQGVQ
Sbjct: 426 PFHSHASSRLDALLEAKAKQGVQ 448