Jatropha Genome Database

JcCB0333061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0333061.10 - phase: 0 /pseudo/partial
         (263 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037723001 assembled CDS                                       289   8e-79
GSVIVT01003355001 assembled CDS                                       213   5e-56
GSVIVT01002067001 assembled CDS                                       193   7e-50

>GSVIVT01037723001 assembled CDS
          Length = 433

 Score =  289 bits (740), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 135/173 (78%), Positives = 149/173 (86%)

Query: 90  SISCNYDLSLCANILGRFQWLTCPRKDLSTGWLQCDPGPLFKPEYYSLPGWMSNWFPRKE 149
           S++      + ANILG F WLTCPRKDLSTGWL+CDP PLFKPE+Y L  W+  WFP KE
Sbjct: 251 SVATVISAFVLANILGHFPWLTCPRKDLSTGWLRCDPDPLFKPEHYPLLEWVPQWFPWKE 310

Query: 150 ISILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMIM 209
           IS+LPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGG TDRMDCQM+M
Sbjct: 311 ISVLPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVM 370

Query: 210 AVFAYIYHQSFVIPRDYSVEMILDQIMASLTLEEQQILFRKLGQIFQERQLRL 262
           AVFAYIYHQSFV+P+ YSVEMIL+QI+ +LT EEQ  L+ KLGQIFQERQL L
Sbjct: 371 AVFAYIYHQSFVVPQSYSVEMILNQILRNLTFEEQHALYMKLGQIFQERQLGL 423


>GSVIVT01003355001 assembled CDS
          Length = 367

 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 103/117 (88%)

Query: 90  SISCNYDLSLCANILGRFQWLTCPRKDLSTGWLQCDPGPLFKPEYYSLPGWMSNWFPRKE 149
           SI+      + ANI+GRFQWLTCPRKDLSTGWL CDPGPLFKPEY+ L GW+  WFP KE
Sbjct: 251 SIATIISAFVLANIMGRFQWLTCPRKDLSTGWLHCDPGPLFKPEYFDLSGWVPRWFPWKE 310

Query: 150 ISILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQ 206
           +SILPVQWHALC+GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGG TDRMDCQ
Sbjct: 311 VSILPVQWHALCVGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQ 367


>GSVIVT01002067001 assembled CDS
          Length = 1078

 Score =  193 bits (490), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 86/98 (87%), Positives = 91/98 (92%)

Query: 101 ANILGRFQWLTCPRKDLSTGWLQCDPGPLFKPEYYSLPGWMSNWFPRKEISILPVQWHAL 160
           ANI+GRFQWLTCPRKDLSTGWL CDPGPLFKPEY+ L GW+  WFP KE+SILPVQWHAL
Sbjct: 233 ANIMGRFQWLTCPRKDLSTGWLHCDPGPLFKPEYFDLSGWVPRWFPWKEVSILPVQWHAL 292

Query: 161 CLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGG 198
           C+GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH G
Sbjct: 293 CVGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHEG 330