Jatropha Genome Database

JcCB0331671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0331671.10 - phase: 0 /partial
         (94 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035168001 assembled CDS                                       176   2e-45
GSVIVT01009087001 assembled CDS                                        92   3e-20
GSVIVT01011096001 assembled CDS                                        52   4e-08

>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  176 bits (446), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 85/91 (93%)

Query: 4   NETSCGNTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGNP 63
           N + CGNTFNCNHPIVRQFILDCLRYWV EMHVDGFRFDLASIMTRGSSLWDA+NV+GNP
Sbjct: 396 NYSGCGNTFNCNHPIVRQFILDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDALNVYGNP 455

Query: 64  VEGDLLTTGTPLSSPPLIDMISNDPILREVK 94
            EGD LTTGTPLSSPPLIDMISNDPILR VK
Sbjct: 456 AEGDSLTTGTPLSSPPLIDMISNDPILRGVK 486


>GSVIVT01009087001 assembled CDS
          Length = 775

 Score = 92.4 bits (228), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 19/92 (20%)

Query: 3   LNETSCGNTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGSSLWDAVNVFGN 62
           LN + CGNT NCNHP+V + ILD LR+WVIE HVDGFRFDLAS++ RG            
Sbjct: 400 LNFSGCGNTLNCNHPMVMELILDSLRHWVIEYHVDGFRFDLASVLCRG------------ 447

Query: 63  PVEGDLLTTGTPLSSPPLIDMISNDPILREVK 94
                  T G+PL++PP+I  I+ D IL   K
Sbjct: 448 -------TDGSPLNAPPIIREIAKDDILSRCK 472


>GSVIVT01011096001 assembled CDS
          Length = 447

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 29/42 (69%)

Query: 10  NTFNCNHPIVRQFILDCLRYWVIEMHVDGFRFDLASIMTRGS 51
           N  NCN+ IV+Q I+D LRYWV E HVDGF F  AS + + S
Sbjct: 346 NALNCNYSIVQQMIVDSLRYWVTEFHVDGFCFINASSLGKLS 387