Jatropha Genome Database

JcCB0329751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329751.10 - phase: 0 /pseudo
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021248001 assembled CDS                                       185   7e-48
GSVIVT01028402001 assembled CDS                                        83   7e-17
GSVIVT01033297001 assembled CDS                                        66   6e-12
GSVIVT01022285001 assembled CDS                                        65   1e-11
GSVIVT01013471001 assembled CDS                                        65   2e-11
GSVIVT01034552001 assembled CDS                                        64   3e-11
GSVIVT01023643001 assembled CDS                                        64   4e-11
GSVIVT01023837001 assembled CDS                                        62   1e-10
GSVIVT01032096001 assembled CDS                                        62   2e-10
GSVIVT01035830001 assembled CDS                                        61   2e-10

>GSVIVT01021248001 assembled CDS
          Length = 983

 Score =  185 bits (470), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 100/121 (82%), Gaps = 1/121 (0%)

Query: 1   MMESGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPYDE 60
           MM+SGVP C TCGE VG  +NGE FVACH+CNFP+CKSC +YEIKE RKVCLRC +PYDE
Sbjct: 1   MMQSGVPPCTTCGEPVGFDSNGEVFVACHECNFPVCKSCLDYEIKEGRKVCLRCSTPYDE 60

Query: 61  -NLLDDGEAKASGNRSTMASQLNNSQDVGIHARHVSSVSTVDSEMNDEYGNPIWKNRVES 119
            + + D E   S N STMA+ LN++QDVG+H RHVS+VSTVDSE+ND+ GNPIWKNRVES
Sbjct: 61  SSTMADVETNQSSNHSTMAAHLNDAQDVGMHTRHVSTVSTVDSELNDDSGNPIWKNRVES 120

Query: 120 W 120
           W
Sbjct: 121 W 121


>GSVIVT01028402001 assembled CDS
          Length = 1000

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 27/143 (18%)

Query: 6   VP-ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPYDEN--- 61
           VP +C  CG+++G+  +GE FVACH+C FP+CK C+EYE  E  + C +C + Y  +   
Sbjct: 29  VPKLCRVCGDEIGVKADGELFVACHECGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGC 88

Query: 62  --LLDDGEAKASGNRSTMASQLNNSQDV--------------------GIHARHVSSVST 99
             +  D E    G+      Q+ N++D                     G       SV+ 
Sbjct: 89  ARVAGDDEGSLDGDDFNDEFQIKNTRDQQNVFAPSENGDYNPQQWHANGQAFSAAGSVAG 148

Query: 100 VDSE-MNDEYGNPIWKNRVESWK 121
            D E   D Y N  WK+RVE WK
Sbjct: 149 KDFEGEKDIYNNDEWKDRVEKWK 171


>GSVIVT01033297001 assembled CDS
          Length = 1243

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 4   SGVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
           +G  +C  C + VG   +GEPF+AC  C FP+C+ C+EYE K+  + C +C + Y
Sbjct: 170 TGDQVCQICNDNVGTTVDGEPFIACSVCAFPVCRPCYEYERKDGNQSCPQCKTKY 224


>GSVIVT01022285001 assembled CDS
          Length = 1097

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          ICH CG+ V +  +GE FVAC++C FP+C+ C+EYE +E  KVC +C + Y
Sbjct: 38 ICHICGDGVEITVDGELFVACNECAFPVCRPCYEYERREGNKVCPQCKTRY 88


>GSVIVT01013471001 assembled CDS
          Length = 969

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 38/51 (74%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          IC  CG+ VGL  +GE FVAC++C FP+C++C+EYE +E  +VC +C + +
Sbjct: 38 ICQICGDDVGLNVDGELFVACNECAFPVCRTCYEYERREGSQVCPQCKTRF 88


>GSVIVT01034552001 assembled CDS
          Length = 1067

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          IC  CG+++ +  +GEPFVAC++C FP+C+ C+EYE +E  + C +C + Y
Sbjct: 38 ICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88


>GSVIVT01023643001 assembled CDS
          Length = 1037

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 38/51 (74%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          +C  CG+++GL  +GE FVAC++C FP+C+ C+EYE +E  ++C +C + +
Sbjct: 36 VCEICGDEIGLTVDGEVFVACNECGFPVCRPCYEYERREGSQLCPQCKTRF 86


>GSVIVT01023837001 assembled CDS
          Length = 935

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 9  CHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          C  CG+ VGL   GE FVAC++C FP+C++C+EYE  E  +VC +C + +
Sbjct: 40 CQICGDDVGLTAEGELFVACNECAFPICRTCYEYERSEGNQVCPQCKTRF 89


>GSVIVT01032096001 assembled CDS
          Length = 929

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 5  GVPICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          G  +C  CG+ VG   +GEPF+AC  C FP+C+ C+EYE K+  + C +C + Y
Sbjct: 16 GGQVCQICGDNVGKTVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69


>GSVIVT01035830001 assembled CDS
          Length = 921

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 8  ICHTCGEQVGLYTNGEPFVACHDCNFPMCKSCFEYEIKENRKVCLRCGSPY 58
          IC  CG+ VGL   G+ FVAC++C FP+C+ C+EYE K+  + C +C + Y
Sbjct: 38 ICQICGDTVGLTAAGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRY 88