Jatropha Genome Database

JcCB0329631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329631.10 + phase: 2 /pseudo/partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037706001 assembled CDS                                       261   2e-70

>GSVIVT01037706001 assembled CDS
          Length = 265

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/139 (91%), Positives = 130/139 (93%)

Query: 111 SIQLSLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVTWEESADLIEVASKCDVVYQTRI 170
           S+   LAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGV WEESADL+EVASKCDVVYQTRI
Sbjct: 127 SLAYLLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVEWEESADLMEVASKCDVVYQTRI 186

Query: 171 QRERFGERIDLYEEARGKYIVDRDVLNVMQKHAVVMHPLPRLDEITIDVDADPRGAYFRQ 230
           QRERFGER DLYEEARGKYIVDRDVL VMQKHAVVMHPLPRLDEIT+DVD D R AYFRQ
Sbjct: 187 QRERFGERADLYEEARGKYIVDRDVLGVMQKHAVVMHPLPRLDEITVDVDEDQRAAYFRQ 246

Query: 231 AKNGLYIRMALLKLLLVGW 249
           AKNGLYIRMALLKLLLVGW
Sbjct: 247 AKNGLYIRMALLKLLLVGW 265