Jatropha Genome Database

JcCB0329531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0329531.10 + phase: 2 /TE/partial
         (839 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000641001 assembled CDS                                       166   5e-41
GSVIVT01012382001 assembled CDS                                       112   7e-25
GSVIVT01009548001 assembled CDS                                       102   7e-22
GSVIVT01031724001 assembled CDS                                        82   1e-15
GSVIVT01028343001 assembled CDS                                        72   1e-12
GSVIVT01013655001 assembled CDS                                        71   2e-12
GSVIVT01013341001 assembled CDS                                        68   1e-11
GSVIVT01015960001 assembled CDS                                        57   5e-08
GSVIVT01010555001 assembled CDS                                        51   2e-06

>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 134/228 (58%), Gaps = 1/228 (0%)

Query: 592 LKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHFSVCLCARFQSSPKESHLIVMKRIL 651
           LKL KD  GK VD  ++K I+GSL+YLT TRPDI  SV L +R+  +P E H +  K+I 
Sbjct: 220 LKLNKDHGGKKVDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKIC 279

Query: 652 RYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTF 711
           RYL GT +  L Y K    DLIG++D D+ G   +R STS     L    + W  KK   
Sbjct: 280 RYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPI 339

Query: 712 VALSITKAEYMAARSCVAQVLCIKQQIADNGLK-LEMIPIKCDNTSAINLIKNLIQHSKT 770
           V LS T+AE++AA  C  Q + +++ + +  LK +    I CDN+S I L KN + H ++
Sbjct: 340 VTLSTTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRS 399

Query: 771 KHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTKSLNESQFCLIRR 818
           KHI+++++ + D    G I + +   E Q+ADIFTK L  + F  +R+
Sbjct: 400 KHIDVKYYFLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVFLELRK 447


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 108/197 (54%), Gaps = 7/197 (3%)

Query: 629 VCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDRN 688
           V L +++  +P   HL ++KRILRYL  T    +   +N   D+IG+SD D+ G+ +DR 
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810

Query: 689 STSRTYQFLDNALIYWFGKKXTFVALSITKAEY--MAARSCVAQVLCIKQQIADNGLKLE 746
           ST+    F+   L+ W  KK   VA S  +AEY  MAA SC  +++ +K  + D G    
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASC--EMVWLKNLLTDLGFS-P 867

Query: 747 MIPIK--CDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIF 804
             P+K  CDN +A+++  N + H +TKHIE+  H I   V    I   +I    QLAD F
Sbjct: 868 TSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAF 927

Query: 805 TKSLNESQFCLIRRELG 821
           TK L+ + F  +  +LG
Sbjct: 928 TKVLSSTVFHRLMFKLG 944


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 111/212 (52%), Gaps = 8/212 (3%)

Query: 608 FKSIIGSLLYLTG-TRPDIHFSVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSK 666
           + S IGSL+Y     RP+I F V +  R+ S+  + H +  K+++RYL  T++  L Y +
Sbjct: 596 YASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRR 655

Query: 667 NDTFDLIGYSDFDFVGSGVDRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARS 726
            D  +++GYS+ DF G   D  STS     L    I W   K + +A S   A+++A   
Sbjct: 656 VDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYG 715

Query: 727 CVAQVLCIKQ-----QIADNGLKLEMIPIKCDNTSAINLIKNLIQHSKTKHIELRHHCIC 781
             +QV+ +++     Q+ D+  +   I I CDN + +   KN    + +KH+E+++  + 
Sbjct: 716 ASSQVVWLRKLISELQVVDSIFR--PIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVK 773

Query: 782 DHVXKGDIMVEFILIEKQLADIFTKSLNESQF 813
           D V K DI+++ I  E  LAD  TK L    F
Sbjct: 774 DLVKKEDIVIKHIRTESMLADPLTKGLKPIMF 805


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%)

Query: 568  YAQELLKKFKMENTKVCSTTMSASLKLEKDENGKDVDIKLFKSIIGSLLYLTGTRPDIHF 627
            Y  +LL++  +  +K+ ++ M+    L   +  +  D  L++S++G+L Y T TRPDI +
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 628  SVCLCARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDR 687
            ++    +F  +P  +HL  +KR+LRYL G+    L +  + + DLI Y+D D      DR
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDR 1069

Query: 688  NSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQ 736
             ST+    F    LI W   K   V+ S  +++Y    +   ++  I+ 
Sbjct: 1070 RSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQS 1118


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 686  DRNSTSRTYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGL-K 744
            DR STS    F+   LI W  KK   VA S  +AEY A      +++ ++  + +    K
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525

Query: 745  LEMIPIKCDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIF 804
             E + + CDN +A+++  N + H +TKHIE+  H I + +  G +   F+    QLADIF
Sbjct: 1526 DEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIF 1585

Query: 805  TKSLNESQFCLIRRELG 821
            TKSL   +   I  +LG
Sbjct: 1586 TKSLRGPRIKYICNKLG 1602


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 633  ARFQSSPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDRNSTSR 692
            ++F   P   H   +KR+LRYLCGT +  +   +     L  +SD D+ G+  D  STS 
Sbjct: 4259 SQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTSA 4318

Query: 693  TYQFLDNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEMIP-IK 751
               +L +  I W  KK   VA S T+AEY +  S  A++  I   + + G+ L   P I 
Sbjct: 4319 YIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVIY 4378

Query: 752  CDNTSAINLIKNLI 765
            CDN  A +L   L+
Sbjct: 4379 CDNVGATHLCAILL 4392


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 2/128 (1%)

Query: 638 SPKESHLIVMKRILRYLCGTSNLDLXYSKNDTFDLIGYSDFDFVGSGVDRNSTSRTYQFL 697
           SP E+H+ V+ +IL+YL GT    L + K+D F +  ++D D+ GS  DR STS    F+
Sbjct: 3   SPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFV 62

Query: 698 DNALIYWFGKKXTFVALSITKAEYMAARSCVAQVLCIKQQIADNGLKLEMIPIKCDNTSA 757
              LI W  KK   VA S  + ++ +    + +VL IK+ + +  LK+ + P+   + S 
Sbjct: 63  FGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEE--LKITIHPLAMISNSL 120

Query: 758 INLIKNLI 765
           + L++ ++
Sbjct: 121 LPLLEIIV 128


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 749 PIK--CDNTSAINLIKNLIQHSKTKHIELRHHCICDHVXKGDIMVEFILIEKQLADIFTK 806
           P+K  CDN + I++  N + H +TKH+E+  H I + +  G + + +I  E+Q+AD+FTK
Sbjct: 17  PMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVCMTYIPTEEQVADVFTK 76

Query: 807 SLNESQF 813
            L++ QF
Sbjct: 77  GLHKRQF 83


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 433 FLNGFINEEVYVEQPPXFESYEKPNHVYKLTRALYGLKQAPRAXYERLSKFLLENYFSRG 492
           FLNG ++EEVY++ PP   S E  N V  L RALYGLKQAPRA + + S  +    ++  
Sbjct: 7   FLNGDLSEEVYMQPPPGL-SVES-NKVCHLRRALYGLKQAPRAWFAKFSSTIFRLGYTAS 64

Query: 493 KVSTILFIKNQAPDILVVQVYVD 515
              + LF++      +++ +Y +
Sbjct: 65  PYDSALFLRRTDKGTILLLLYSN 87