Jatropha Genome Database

JcCB0320341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0320341.10 + phase: 0 
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026649001 assembled CDS                                        97   2e-21

>GSVIVT01026649001 assembled CDS
          Length = 160

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 57/65 (87%)

Query: 12  EEAERQKQENENAAMAVAKRQKMLEKEKETIERKPFIEIQSETKRFRQDVFKRRHRARAL 71
           EEAERQ+ EN+ AAMAV KRQ+MLE EKE IE++PF+EI+ ETKRFRQDVFKRRHRARAL
Sbjct: 70  EEAERQQLENKAAAMAVLKRQRMLETEKECIEQRPFMEIEDETKRFRQDVFKRRHRARAL 129

Query: 72  RNQGS 76
           +N+  
Sbjct: 130 KNRDC 134