Jatropha Genome Database

JcCB0320291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0320291.10 - phase: 0 /partial
         (260 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035957001 assembled CDS                                       360   e-100
GSVIVT01007958001 assembled CDS                                       321   2e-88
GSVIVT01022808001 assembled CDS                                       273   8e-74
GSVIVT01003875001 assembled CDS                                       207   3e-54

>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/262 (66%), Positives = 205/262 (78%), Gaps = 6/262 (2%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+LFRK FYRKPPDGLLEI ERVYVFD CFT D  ++E Y  YM  IVGQL+EHFPDASF
Sbjct: 9   MALFRKFFYRKPPDGLLEISERVYVFDCCFTTDVLEDEEYKVYMGSIVGQLREHFPDASF 68

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGVQN 120
           +VFNFREG+ QSQ+S I+SEY+MT+M+YPR YEGCPLL ME+IHHFLRS ESWLSLG QN
Sbjct: 69  MVFNFREGDSQSQISSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQN 128

Query: 121 LLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXXX 180
           +LLMHCER GWP+LAFMLAALL+YRKQ++GE KTLDMIY+                    
Sbjct: 129 VLLMHCERSGWPILAFMLAALLIYRKQYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQL 188

Query: 181 RYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTNDV 240
           RYLQYVSRRNV SEWPPL+RALTL+C+ILR IP+ DGEGGCRP+FRIYG    +   +  
Sbjct: 189 RYLQYVSRRNVGSEWPPLDRALTLDCVILRIIPNLDGEGGCRPIFRIYGQD-PFMVAD-- 245

Query: 241 CSTPRN--STPRKGETVRNYKQ 260
             TP+   STP++ +TVR+YKQ
Sbjct: 246 -RTPKVLFSTPKRSKTVRHYKQ 266


>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score =  321 bits (823), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/261 (58%), Positives = 191/261 (73%), Gaps = 3/261 (1%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+LFR+ FYRKPPD LLEI ERVYVFD CF+ D  +E+ Y  YM GIV QL+++F DASF
Sbjct: 1   MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYMGGIVAQLQDYFTDASF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSL-GVQ 119
           +VFNFREG+++SQ+SDI+S+Y+MT+M+YPRQYEGCPLL +E+IHHFLRS ESWLSL G Q
Sbjct: 61  MVFNFREGDRRSQISDILSQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQ 120

Query: 120 NLLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXX 179
           N+LLMHCERGGWPVLAFMLA LLLYRKQ++GE +TL+M+Y+                   
Sbjct: 121 NVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQRTLEMVYKQAPRELLHLLSPLNPQPSQ 180

Query: 180 XRYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTND 239
            RYLQY+SRRN  S+WPP +  L L+ +ILR +P F+G  GCRPV R+YG   S      
Sbjct: 181 LRYLQYISRRNFGSDWPPSDTPLKLDYLILRILPLFNGGRGCRPVVRVYGQDASAMANR- 239

Query: 240 VCSTPRNSTPRKGETVRNYKQ 260
             S    ST +  + VR+Y+Q
Sbjct: 240 -SSKLLFSTSKTKKHVRHYQQ 259


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score =  273 bits (697), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 180/261 (68%), Gaps = 3/261 (1%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           MSL  + FYR+PPDGLLE  +RVYVFD CF+ +      Y  Y+  I+ +L E +PD+SF
Sbjct: 1   MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTEVLPNGMYQIYLHEIINELHEQYPDSSF 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGV-Q 119
           L FNFREGEK+SQ ++I+ EY++T+++YPRQYEGCPLL + +I HFLR   SWLSLG  Q
Sbjct: 61  LAFNFREGEKRSQFAEILCEYDVTVLDYPRQYEGCPLLPLSLIQHFLRVCGSWLSLGSQQ 120

Query: 120 NLLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXX 179
           N++L+HCERGGWP+LA +LA+ L++RK  SGE KTL++++R                   
Sbjct: 121 NIILLHCERGGWPLLALLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQ 180

Query: 180 XRYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTND 239
            RYLQYV+RRN++ EWPP ERAL+L+C+ LR IP FD + GCRP+ RI+G  L   +   
Sbjct: 181 LRYLQYVARRNISPEWPPPERALSLDCVFLRAIPSFDSQNGCRPIIRIFGRNL--HSKGG 238

Query: 240 VCSTPRNSTPRKGETVRNYKQ 260
           + +    S  +K +T+R+Y Q
Sbjct: 239 LSTQMLFSMSKKRKTIRHYCQ 259


>GSVIVT01003875001 assembled CDS
          Length = 947

 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/262 (43%), Positives = 144/262 (54%), Gaps = 60/262 (22%)

Query: 1   MSLFRKLFYRKPPDGLLEICERVYVFDYCFTVDAWQEENYTSYMSGIVGQLKEHFPDASF 60
           M+L RKLFYRKPPDGLLEIC+RV+VFD CFT DAW+EENY  Y+ GIVGQL++H PDA  
Sbjct: 1   MALLRKLFYRKPPDGLLEICDRVHVFDCCFTTDAWEEENYKVYIRGIVGQLRDHIPDAWL 60

Query: 61  LVFNFREGEKQSQLSDIMSEYNMTIMEYPRQYEGCPLLRMEVIHHFLRSGESWLSLGVQN 120
                            +   N+ +M                  H  R G   L+  +  
Sbjct: 61  ----------------SLGPNNLLLM------------------HCERGGWPILAFMLAA 86

Query: 121 LLLMHCERGGWPVLAFMLAALLLYRKQFSGEHKTLDMIYRXXXXXXXXXXXXXXXXXXXX 180
           LL                    +YRK ++GE KTL+MIY+                    
Sbjct: 87  LL--------------------IYRKHYTGEQKTLEMIYKQSPCELLQCLSPLNPVPSQT 126

Query: 181 RYLQYVSRRNVASEWPPLERALTLECIILRFIPDFDGEGGCRPVFRIYGHGLSYQTTNDV 240
           RYLQY+SRRN+ASEWPPL+RALTL+C+I+R +PDFDGEGGCRP+FRIYG           
Sbjct: 127 RYLQYISRRNMASEWPPLDRALTLDCVIIRLVPDFDGEGGCRPIFRIYGQDPFLVADR-- 184

Query: 241 CSTPRN--STPRKGETVRNYKQ 260
             TP+   STP+K +T+R+YKQ
Sbjct: 185 --TPKLLFSTPKKSKTIRHYKQ 204