Jatropha Genome Database

JcCB0319311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.30 - phase: 2 /TE
         (375 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037631001 assembled CDS                                       181   6e-46
GSVIVT01034745001 assembled CDS                                       167   6e-42
GSVIVT01038695001 assembled CDS                                       167   8e-42
GSVIVT01028612001 assembled CDS                                        86   3e-17
GSVIVT01021964001 assembled CDS                                        55   6e-08
GSVIVT01007613001 assembled CDS                                        54   2e-07
GSVIVT01037342001 assembled CDS                                        50   2e-06
GSVIVT01036343001 assembled CDS                                        48   7e-06

>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  181 bits (459), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 129/227 (56%), Gaps = 14/227 (6%)

Query: 105  NWRKDRFPRCPHCKKTNHIENYCWFRPGAECKVCKQFGHTEKVCXXXXXXXXXXXXXXXT 164
            N +   FP CPHCKKTNH    CW+RP  +C  C + GH E++C               T
Sbjct: 956  NQKNGVFPPCPHCKKTNHSPKKCWWRPDVKCNKCGKQGHVERICKNQQQEE--------T 1007

Query: 165  KNSEKY--EEQLFAAKEIEKCDVLIEAKETWLVDSGCTNHMTPNLVNFNSLDTNYSSKVR 222
                 Y  EEQLFAA     C       ++WLVDSGCTNHMT N   F  LD    SKVR
Sbjct: 1008 NAVVDYCQEEQLFAAT----CFANKSTSKSWLVDSGCTNHMTNNQDLFRELDRTTISKVR 1063

Query: 223  LGDGRLVDVKGKGDVIIQTPSGTKRVSDVLYVPKLNQSLFSVGQLLDKNYSLLFKDKICE 282
            +G+G  + VKGKG V I++ +G K + DVL+VP ++Q+L SVGQL++K + + F+D+ C 
Sbjct: 1064 IGNGEYIPVKGKGTVAIESQTGLKLIYDVLFVPDIDQNLLSVGQLVEKEFKVYFEDRNCI 1123

Query: 283  ISDPSGSKLFAVKMKRRSFPLHLRNFEEESCLSHKEESDLWHKRLGH 329
            I D  G ++F +KMK +SF L+L   E  + L     +  W +R+ H
Sbjct: 1124 IKDAEGKEVFNIKMKGKSFALNLLEDEHTAILQQDSTTMFWDRRVEH 1170


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 132/252 (52%), Gaps = 5/252 (1%)

Query: 107 RKDRFPRCPHCKKTNHIENYCWFR--PGAECKVCKQFGHTEKVCXXXXXXXXXXXX--XX 162
           RK +FP C HC++TNH E  CW +  P   C  C + GH+EK C                
Sbjct: 244 RKGKFPSCSHCRRTNHAEKDCWHKGKPLFNCNFCNKLGHSEKYCRAKKKQSQQQPKQNAN 303

Query: 163 XTKNSEKYEEQLF-AAKEIEKCDVLIEAKETWLVDSGCTNHMTPNLVNFNSLDTNYSSKV 221
            T+  +  +E LF A++ +   ++      TWL+DSGCT+HMT  L  F S+D +   KV
Sbjct: 304 VTEEDKNDDEHLFMASQALSSHELSSHELNTWLIDSGCTSHMTKYLSIFTSIDRSVQPKV 363

Query: 222 RLGDGRLVDVKGKGDVIIQTPSGTKRVSDVLYVPKLNQSLFSVGQLLDKNYSLLFKDKIC 281
           +LG+G +V  KGKG + I T   TK V++VLY+P L+Q+L SV Q+L   Y++ FK   C
Sbjct: 364 KLGNGEVVQAKGKGTIAISTKRRTKIVTNVLYIPDLDQNLLSVAQMLRNGYAVFFKGNFC 423

Query: 282 EISDPSGSKLFAVKMKRRSFPLHLRNFEEESCLSHKEESDLWHKRLGHTXXXXXXXXXXX 341
            I++  G ++  +KM   +F L L   E     +  +ES +WHKR GH            
Sbjct: 424 FITNVHGKEIAKIKMNGNNFYLKLDLVEGHVFSAKIDESVVWHKRYGHFNLKSLRFMQEA 483

Query: 342 XXVTDLPSVVEN 353
             V D+P +  N
Sbjct: 484 GMVEDMPEISVN 495


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 15/202 (7%)

Query: 105 NWRKDRFPRCPHCKKTNHIENYCWFRPGAECKVCKQFGHTEKVCXXXXXXXXXXXXXXXT 164
           N +   FP CPHCKKTNH    CW+RP  +C  C + G+ E++C               T
Sbjct: 127 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGNMERICKNQQQEE--------T 178

Query: 165 KNSEKY--EEQLFAAKEIEKCDVLIEAKETWLVDSGCTNHMTPNLVNFNSLDTNYSSKVR 222
             +  Y  EEQLFAA     C       ++WLVDSGCTNHMT N   F  LD    SKVR
Sbjct: 179 SAAVDYCQEEQLFAAT----CFANKSTSKSWLVDSGCTNHMTNNQDLFRELDRTTISKVR 234

Query: 223 LGDGRLVDVKGKGDVIIQTPSGTKRVSDVLYVPKLNQSLFSVGQLLDKNYSLLFKDKICE 282
           +G+G  + VKGKG V I++ +G K + DVL+VP ++Q+L SVGQL++K + + F+D+ C 
Sbjct: 235 IGNGEYIPVKGKGTVAIESQTGLKLIYDVLFVPDIDQNLLSVGQLVEKEFKVYFEDRNCI 294

Query: 283 ISDPSGSKLFAVKMKRRSF-PL 303
           I D  G ++F +KMK +SF PL
Sbjct: 295 IKDAEGKEVFNIKMKGKSFDPL 316


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 16/219 (7%)

Query: 134 ECKVCKQFGHTEKVCXXXXXXXXXXXXXXXTKNSEKYEEQLFAAKEIEKCDVLIEAKETW 193
           EC  C + GH    C                KN E  E  L A  ++ K       ++TW
Sbjct: 273 ECYNCHKLGHFAWECPHRETGAYY------AKNQE--EMLLMAYVDLNKT----SREDTW 320

Query: 194 LVDSGCTNHMTPNLVNFNSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDVLY 253
            +DSGC+NHM      F+  D  +   V+LG+   + V GKG+V ++    T+ ++ V Y
Sbjct: 321 FLDSGCSNHMCGKKDYFSDFDGTFRDSVKLGNNTSMSVLGKGNVRLKVNEMTQIITGVFY 380

Query: 254 VPKLNQSLFSVGQLLDKNYSLLFKDKICEISDPSGSKLFAVKMKR-RSFPLH-LRNFEEE 311
           VP+L  +L S+GQL +K  ++LF+   C++       +   KM   R F L+ L      
Sbjct: 381 VPELKNNLLSIGQLQEKGLTILFQHGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPISS 440

Query: 312 SCLSHKEES--DLWHKRLGHTXXXXXXXXXXXXXVTDLP 348
           +C +   E    LWH R GH              V  LP
Sbjct: 441 TCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLP 479


>GSVIVT01021964001 assembled CDS
          Length = 191

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 14/149 (9%)

Query: 191 ETWLVDSGCTNHMTPNLVNFNSLDTNYSS-KVRLGDGRLVDVKGKGDVIIQTPSGTKRVS 249
           ++W++DS  TNHMT     FN+   N S+ K+ + +G L  + G GD+ I TP  T  + 
Sbjct: 23  DSWIIDSDATNHMTSKSQLFNTYTLNPSNKKIVVANGSLATIAGFGDIYI-TP--TLILK 79

Query: 250 DVLYVPKLNQSLFSVGQLL-DKNYSLLFKDKICEISDPSGSKLFAVKMKRRSFPLHLRNF 308
           +V +VPK + +L S+ +L  D    ++F    C + +    +   +  K RS   HL + 
Sbjct: 80  NVHHVPKFSANLVSIQKLTHDLKCYVIFLPSYCVLQEQGSGRRIGLA-KERSGLYHLESS 138

Query: 309 EEE--------SCLSHKEESDLWHKRLGH 329
           ++            S+KE   L+H RLGH
Sbjct: 139 QKTSNNLSLSFLSSSNKETIWLYHLRLGH 167


>GSVIVT01007613001 assembled CDS
          Length = 128

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 191 ETWLVDSGCTNHMTPNLVNFNSLDTNYSS-KVRLGDGRLVDVKGKGDVIIQTPSGTKRVS 249
           E+W++DSG T+HMT     FN+   + S+ K+ + +G LV V G GD+ I TP  T  + 
Sbjct: 23  ESWIIDSGATDHMTSKSQLFNTYTPSPSNKKIVVANGSLVTVVGFGDIYI-TP--TLILK 79

Query: 250 DVLYVPKLNQSLF 262
           +VL+VPKL+ +LF
Sbjct: 80  NVLHVPKLSANLF 92


>GSVIVT01037342001 assembled CDS
          Length = 283

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 186 LIEAKETWLVDSGCTNHMTPNLVNFN---SLDTNYSSKVRLGDGRLVDVKGKGDVIIQTP 242
           +I     W++DSG + H+  N+  FN    ++      V +GD R + V GKG V+++  
Sbjct: 162 MITYLNDWIIDSGASVHICGNIRAFNYFTPIEEGEHRMVLVGDLRPLPVIGKGQVVLKLA 221

Query: 243 SGTKRV-SDVLYVPKLNQSLFSVGQLLDKNYSLLF 276
           S    V +DVLYVP ++ +L SV  L      +LF
Sbjct: 222 SNNILVLNDVLYVPNISLNLISVSSLGKTGIRVLF 256


>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 18/209 (8%)

Query: 134 ECKVCKQFGHTEKVCXXXXXXXXXXXXXXXTKNSEKYEEQLFAAKEIEKCDVLIEAKETW 193
           +C++C +FGH    C               +  S+     L  A        L++   +W
Sbjct: 390 QCQLCGKFGHMVLSCYHRFDVNYQGPRAPASSTSQIGPIPLAQAMMAAPSPTLMD---SW 446

Query: 194 LVDSGCTNHMTPNLVNF-NSLDTNYSSKVRLGDGRLVDVKGKGDVIIQTPSGTKRVSDVL 252
            +DS  T+H++    N  N    N +  V + +G+ + +   G   + T +    + +VL
Sbjct: 447 FLDSSATHHLSHTAANIHNGTPYNGTDSVMVDNGKSLPITQVGHSFLHTSAKPFVLHNVL 506

Query: 253 YVPKLNQSLFSVGQLLDKN--------YSLLFKDKICEISDPSGS---KLFAVKMKRRSF 301
           YVP+L  +L SV +    N         S   KDK  +++   G     L+       S 
Sbjct: 507 YVPQLTSNLISVSKFCTDNNTIMEFHPSSFFVKDKDTKVTLLQGQLERGLYKFPTSSISS 566

Query: 302 PLHLRNFEEESCLSHKEESD-LWHKRLGH 329
           P    + + +  L+  + +  LWH++ GH
Sbjct: 567 P--TASLKHQVFLTKTQPTTMLWHQQFGH 593