Jatropha Genome Database

JcCB0319311.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.20 + phase: 0 
         (60 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023938001 assembled CDS                                        71   1e-13
GSVIVT01030279001 assembled CDS                                        67   1e-12
GSVIVT01025266001 assembled CDS                                        60   2e-10
GSVIVT01033317001 assembled CDS                                        59   5e-10
GSVIVT01032091001 assembled CDS                                        59   6e-10
GSVIVT01032092001 assembled CDS                                        55   5e-09

>GSVIVT01023938001 assembled CDS
          Length = 604

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query: 1   MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           +Y GSG FLN+MGI  AS M  PA RFL LRA+GAPAVV+ LA+QGI RG +
Sbjct: 259 LYFGSGWFLNLMGIPLASSMHAPARRFLSLRALGAPAVVVSLALQGILRGFK 310


>GSVIVT01030279001 assembled CDS
          Length = 558

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 1   MYLGSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           + +GSG  +N+MGI   SPMR+PAE+FL LRA GAP +V+ LA QG FRG +
Sbjct: 219 LSVGSGFLMNIMGIPVDSPMRVPAEQFLTLRAFGAPPIVIALAAQGTFRGFK 270


>GSVIVT01025266001 assembled CDS
          Length = 513

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%)

Query: 4   GSGIFLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           G+   LN MG+ S SPM  PA+ +L LR++GAPAV+L LA+QG+FRG +
Sbjct: 186 GAKPILNFMGVHSDSPMLAPAQEYLTLRSLGAPAVLLSLAMQGVFRGFK 234


>GSVIVT01033317001 assembled CDS
          Length = 507

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 36/44 (81%)

Query: 9   LNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           LN MG++S SPM  PA ++L LR++GAPAV+L LA+QG+FRG +
Sbjct: 185 LNFMGVNSGSPMLAPAMQYLTLRSLGAPAVLLSLAMQGVFRGFK 228


>GSVIVT01032091001 assembled CDS
          Length = 542

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 8   FLNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
            L+ MG+ S S M  PA R+L LRA+GAPAV+L LA+QG+FRG +
Sbjct: 220 LLSFMGVKSGSSMLTPARRYLTLRALGAPAVLLSLAMQGVFRGFK 264


>GSVIVT01032092001 assembled CDS
          Length = 536

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 9   LNMMGISSASPMRIPAERFLKLRAIGAPAVVLYLAIQGIFRGLR 52
           L+ MG+ S SPM  PA ++L LR++GAPAV+L LA+QG+FRG +
Sbjct: 209 LSFMGVKSGSPMLPPALKYLTLRSLGAPAVLLSLAMQGVFRGFK 252