Jatropha Genome Database

JcCB0319311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0319311.10 - phase: 0 /partial
         (117 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003829001 assembled CDS                                       135   5e-33
GSVIVT01013358001 assembled CDS                                       108   5e-25
GSVIVT01033214001 assembled CDS                                        78   7e-16
GSVIVT01033207001 assembled CDS                                        73   2e-14
GSVIVT01035030001 assembled CDS                                        72   7e-14
GSVIVT01035272001 assembled CDS                                        71   8e-14
GSVIVT01035031001 assembled CDS                                        67   1e-12

>GSVIVT01003829001 assembled CDS
          Length = 586

 Score =  135 bits (339), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 72/97 (74%)

Query: 21  SFNRFLFNFPQNSRIFSYFPGDFEPESWKPMEGLVRCSANFVPLSPISFLERAAKVYRDR 80
           S NR   N   +SR F +F GD  P SWK  EGLVRC  N VPLSPI+FLER+A  YRDR
Sbjct: 15  SLNRLHPNLSHDSRRFCHFSGDIGPGSWKSTEGLVRCPVNDVPLSPITFLERSATAYRDR 74

Query: 81  KSVVYGSVVYTWNETYKRCLSLASTLTRLGISRGDVV 117
            SVVYGSV YTW+ET +RCL LAS LT+LGISRGDVV
Sbjct: 75  TSVVYGSVKYTWSETQERCLKLASALTQLGISRGDVV 111


>GSVIVT01013358001 assembled CDS
          Length = 411

 Score =  108 bits (270), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 44  EPESWKPMEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLA 103
           + +S + MEG++RCSAN VPLSPISFLER+A VYRDR ++VYG V +TW +T +RC  LA
Sbjct: 3   QKKSVESMEGMIRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLA 62

Query: 104 STLTRLGISRGDVV 117
           S +T LGISRGDVV
Sbjct: 63  SAITHLGISRGDVV 76


>GSVIVT01033214001 assembled CDS
          Length = 509

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 25  FLFNFPQNSRI-FSYFPGDFEPESWKPMEGLVRCSANFVPLSPISFLERAAKVYRDRKSV 83
           F FN P+   +    F  + + E  + ME L    AN  PL+ +SFL+RAA VY D  SV
Sbjct: 13  FHFNRPETHSLSLPNFIANLKREDSENMEELKPRPANSSPLTTLSFLDRAATVYGDCPSV 72

Query: 84  VYGSVVYTWNETYKRCLSLASTLTRLGISRGDVV 117
           VY S  YTW++T+ RCL +AS++  LGI RG VV
Sbjct: 73  VYNSTTYTWSQTHHRCLQVASSIKSLGIGRGQVV 106


>GSVIVT01033207001 assembled CDS
          Length = 449

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L    AN  PL+P+ FL+RAA VY D  SV+Y S+ YTW++T++RCL +AS++   G
Sbjct: 1   MDSLKPRPANSSPLTPLGFLDRAATVYGDCPSVLYNSITYTWSQTHRRCLQVASSIKSFG 60

Query: 111 ISRGDVV 117
           I RG VV
Sbjct: 61  IGRGHVV 67


>GSVIVT01035030001 assembled CDS
          Length = 513

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 49  KPMEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTR 108
           + ++ L + +AN+  L+P+ FLERAA V+ +RKSV++GS+ YTW +TY+RC  LAS L++
Sbjct: 5   RDIDDLPKNAANYTALTPLWFLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLASALSK 64

Query: 109 LGISRGDVV 117
             I  G  V
Sbjct: 65  YSIGAGSTV 73


>GSVIVT01035272001 assembled CDS
          Length = 444

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 47/67 (70%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           M+ L + +AN+  L+PI+FL RAA  Y  + S++Y S  +TW +TY+RC  LAS+L RL 
Sbjct: 1   MDRLPKSAANYTALTPINFLTRAAVAYARKTSLIYESTRFTWQQTYERCCRLASSLHRLN 60

Query: 111 ISRGDVV 117
           +++ DVV
Sbjct: 61  VAKNDVV 67


>GSVIVT01035031001 assembled CDS
          Length = 335

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 47/67 (70%)

Query: 51  MEGLVRCSANFVPLSPISFLERAAKVYRDRKSVVYGSVVYTWNETYKRCLSLASTLTRLG 110
           ++ L + +AN+  L+P+  LERAA V+ +RKSV++GS+ YTW +TY+RC  LAS L++  
Sbjct: 7   IDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLASALSKYS 66

Query: 111 ISRGDVV 117
           I  G  V
Sbjct: 67  IGAGSTV 73